Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04555 ATGGCTTCTTCTCCTCCAAACACCACCGTTCCTCCTCCTCTCCCAGATCCACCAACCGCCGTCCCCCTCGCTCTCCCAGCTCCACTCCCTCTCCCTCCCCCTACCTCCACCCGCCGTCTCCCTCCTCCTTGTTGGTCCCCCGACGAAACCCTAGCTCTCATCGATTCCTACCGTGACAAATGGTACTCTCTTGGTCGTGGTAACCTAAAAGCTACTCACTGGCAAGAAGTTGCTGACGCTGTTTCTCAGCGTTGCCCTAACGCTTCTCCGTCGAAAACTCCCGTTCAATGTCGTCATAAGATGGAGAAGCTTCGTAAGCGTTATCGGACTGAGATTCAACGTGCTCGCTCGCTTCCTGTCTCTAGATTTAACTCCGCTTGGGTTCACTTTAAGCTTATGGATTCTATGGAGAAAGGTCCTTCTCCTGTTAAATCTGAAAACAACGATTCCGATACTGATGATGATGACGAAGAAGAAGATCGAGATCAGGATCTGTATATGGATATGAAAAACGGTCACGGATCTAATACTAGAAGCATCAATAAGTTGTATAAAAACGGTTTCGGTGGAAGTGGTGGTGGTGTTGGTGGAGGGTTTAGGATTAGGTATCCACCGGCACAACCTGAATCGAAGTTTTTCCCTGATCCGAAATATAACCCTAATTTGAATCAAAACTATGGGACGCCACCGACAGCATCAACGACGAAGGGGATGGGGAACAAGAGGGATAGAGATCCCTTGGGAGAGGTTGTGTCTGCTATTAAAGTATTGGGTGATGGATTTGTGAGGATGGAGCAAATGAAGATGGAGATGGCGAGGGAGATTGAAGCTATGAGGATGGAGATGGAAATGAAGCGAACTGAGATGATTCTCGAGTCTCAACAGCGAATTGTGGAGGCATTTGCGAAAGCCATTTCCGATGATAGCAACAACAACAAGATGAAGCCTATTAATAAGAGAATTCCCTCGCCACAACAACCATAA 984 0.4776 MASSPPNTTVPPPLPDPPTAVPLALPAPLPLPPPTSTRRLPPPCWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSQRCPNASPSKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSAWVHFKLMDSMEKGPSPVKSENNDSDTDDDDEEEDRDQDLYMDMKNGHGSNTRSINKLYKNGFGGSGGGVGGGFRIRYPPAQPESKFFPDPKYNPNLNQNYGTPPTASTTKGMGNKRDRDPLGEVVSAIKVLGDGFVRMEQMKMEMAREIEAMRMEMEMKRTEMILESQQRIVEAFAKAISDDSNNNKMKPINKRIPSPQQP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04555 327 SMART 118neu2 52 141 IPR006578 -
Trre16g04555 327 FunFam Trihelix transcription factor ASIL2 45 110 - -
Trre16g04555 327 Pfam Myb/SANT-like DNA-binding domain 43 136 IPR044822 -
Trre16g04555 327 MobiDBLite consensus disorder prediction 136 161 - -
Trre16g04555 327 Gene3D - 45 110 - -
Trre16g04555 327 MobiDBLite consensus disorder prediction 305 327 - -
Trre16g04555 327 MobiDBLite consensus disorder prediction 221 237 - -
Trre16g04555 327 MobiDBLite consensus disorder prediction 1 41 - -
Trre16g04555 327 ProSiteProfiles Myb-like domain profile. 45 105 IPR001005 -
Trre16g04555 327 Coils Coil 268 288 - -
Trre16g04555 327 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 22 308 IPR044823 -
Trre16g04555 327 MobiDBLite consensus disorder prediction 221 245 - -
Trre16g04555 327 MobiDBLite consensus disorder prediction 1 43 - -
Trre16g04555 327 Coils Coil 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04555 Trre-Chr16 50193043 50194026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04555 44 136 Trihelix Transcription Factor Family AT3G14180 36.559 2.83e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre16g04555 Myb_DNA-bind_4 4.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04555 - - mtr:25494055 483.796