Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04533 ATGTATCACTGTTTTATGAATTTGTCATTAAATGAACTCTCAGGTCGCATTCCAAATAGCATTGATAATTTAGAAGTTGGATTTTTAAAACAACTCAATGAACTTGATTTGTCTACTAACCATCTCTCTGGCACAATCCCTTCTACAATTGGAAACTTGAGCAATTTATATTTTCTTTACCTTTATACTAACTATCTCAGTGGTAGCATTCCTAGTGAAATTGGAAAGCTATATTCCCTTTCCACAATTCAGTTGGTGCAAAATAACCTCTCTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAGAATCTATGCTCCTTAACCGAAATAATCTATCTGGGCCAATTCCTTCCACTATTGGAAATTTGGCAAAACTTAGTATACTTAATGTTTTCTCAAATAAGCTCAGTGGCAATATTCCAAAAGAAATGAATAGGCTTATAAATATTGAAATATTTGAGTTGAGTGATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAAAGCTCAAATATTTCAATGGCCATGATAATCAATTCACAGGTCCTATTGCAGAGAGTTTGAATAATTGTTCAAACCTTATAAGAGTTAGGTTTGAGAAAAACCAACTAACTGGAAACATAGAAGACATGTTTGGTGTGTACCCAAATTTAGACTACATTGATTTGAGTGACAATAATTTTTTTGGCCATCTATCATCAAATTGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAACAATAATTTATCAGGAAACATATCACAAAAACTAGGTGGAGCAACCAATTTACATGTACTTAACTTATCTTCAAACCACCTTACAGGAAAAATTCCACAGGAGCTAGGAAATTTAACATCCTTGTTACAACTCTCATTAAGTAGCAATCATTTTTTTGGAGAAGTTCCTATAGAAATTGCATCATTGCAGCAAATAACTACTTTGGATCTTGCAACCAATAATTTAAGTGGCTTTATCCCAAAACAACTTGGATTGTTACCTATGTTATTAAATTTGAATTTGAGCCAAAATAAATTTGATGGAAACATTCCCTTTGTGATTGGTCAATTACAAGTGATTGAAAATCTTGATCTTAGTGGGAACTTTATAGATGGAACCATACCAGGAATGCTTGGACAGTTGAAATACTTAGAAACATTGAATCTGTCACATAATAATCTTTCTGGTACCATTCCCTTTAAATATAATGAGATGTTAAGTTTGACAATTGTTGATATATCATACAACCAATTGGAGGGTCCGATTCCAAATATTCCAGCCTTCAAAAATGCTCCAATTGAAGCCCTTAAAAATAACAAAGGGTTGTGTGGTAATGTCTCTGGCCTAGAGCTTTGCTCAACATTAGGTAGCAACTTTCACAGTCATAAGACTAACAAAATTTTGGTGCTAGTCTTACCCCTCACTCTAGGCACTTTATTGTTAGCATTATTTGTTTATGGGCTCTCATACATTTTATTCCAAACTTTAAGAACAAAAGAATATAAGCATGCAGAAGAAATTCAAACTAATAATCTATTTGCAATATGGAGCTTTGATGGCCAAATGGTGTATGAGAATATTATCGAAGCCACGGAACAATTTGACAACAAACATCTCATTGGGGTAGGAGGGCATGGAAGTGTTTACCAAGCAGAGTTGGCTACAGGTCAAGTGGTAGCTGTGAAGAAACTCCATTCATTAGAAAATGGACAAGTGTCTAATCTAAAAGCTTTTGCAAGTGAGATAAGTGCTTTGACAGAAATCCGACATCGGAACATTGTAAAGTTATATGGATTTTGTTCACATTCACTACACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATTTTGAAAGATGATGAACTAGCAACTGCATTTGATTGGAATATAAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCACGATTGTTCTCCCGCAATTGTTCATCGTGATATATCCAGCAAGATTGTTGTTTTGGATTCAGAGTATGTAGCTCATGTTTCAGACTTCGGAACTGCTAAGTTTCTTAATCCTAATTCTTCCAACCGGACTTGTTTTGTAGGCACATTTGGATATTCTGCTCCAGAACTTGCATACACAATGGAGGTAAATGAGAAATATAAGTTGGACCAACGTCTCCCTCATCCTACAAATACTATTGTTAAGGAGGTGGTATCAATGATAAGAGTAGCAATTTATTGTCTGATCGAAAGCCCATGTTCTCGCCCTAGTATGGAGCAAGTTTGCAAGGAGATTGTGATGATGTCAAAGTCATCTTGA 2337 0.3457 MYHCFMNLSLNELSGRIPNSIDNLEVGFLKQLNELDLSTNHLSGTIPSTIGNLSNLYFLYLYTNYLSGSIPSEIGKLYSLSTIQLVQNNLSGPIPSSIGNLINLESMLLNRNNLSGPIPSTIGNLAKLSILNVFSNKLSGNIPKEMNRLINIEIFELSDNNFIGHLPQNICVGGKLKYFNGHDNQFTGPIAESLNNCSNLIRVRFEKNQLTGNIEDMFGVYPNLDYIDLSDNNFFGHLSSNWGKCKNLTSLKISNNNLSGNISQKLGGATNLHVLNLSSNHLTGKIPQELGNLTSLLQLSLSSNHFFGEVPIEIASLQQITTLDLATNNLSGFIPKQLGLLPMLLNLNLSQNKFDGNIPFVIGQLQVIENLDLSGNFIDGTIPGMLGQLKYLETLNLSHNNLSGTIPFKYNEMLSLTIVDISYNQLEGPIPNIPAFKNAPIEALKNNKGLCGNVSGLELCSTLGSNFHSHKTNKILVLVLPLTLGTLLLALFVYGLSYILFQTLRTKEYKHAEEIQTNNLFAIWSFDGQMVYENIIEATEQFDNKHLIGVGGHGSVYQAELATGQVVAVKKLHSLENGQVSNLKAFASEISALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSVDKILKDDELATAFDWNIRVNAIKDIANALSYMHHDCSPAIVHRDISSKIVVLDSEYVAHVSDFGTAKFLNPNSSNRTCFVGTFGYSAPELAYTMEVNEKYKLDQRLPHPTNTIVKEVVSMIRVAIYCLIESPCSRPSMEQVCKEIVMMSKSS 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04533 778 PRINTS Leucine-rich repeat signature 32 45 - -
Trre16g04533 778 PRINTS Leucine-rich repeat signature 389 402 - -
Trre16g04533 778 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 149 464 - -
Trre16g04533 778 Pfam Leucine rich repeat 247 306 IPR001611 GO:0005515
Trre16g04533 778 FunFam Nuclear pore complex protein NUP107 21 120 - -
Trre16g04533 778 Pfam Protein kinase domain 543 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04533 778 ProSiteProfiles Leucine-rich repeat profile. 271 294 IPR001611 GO:0005515
Trre16g04533 778 ProSitePatterns Protein kinases ATP-binding region signature. 548 571 IPR017441 GO:0005524
Trre16g04533 778 Gene3D Ribonuclease Inhibitor 175 466 IPR032675 -
Trre16g04533 778 Gene3D Ribonuclease Inhibitor 4 174 IPR032675 -
Trre16g04533 778 SUPERFAMILY RNI-like 7 258 - -
Trre16g04533 778 Gene3D Phosphorylase Kinase; domain 1 502 620 - -
Trre16g04533 778 PANTHER LEUCINE RICH REPEAT KINASE 2 98 726 - -
Trre16g04533 778 FunFam Leucine-rich repeat receptor protein kinase MSP1 505 620 - -
Trre16g04533 778 SUPERFAMILY Protein kinase-like (PK-like) 523 771 IPR011009 -
Trre16g04533 778 SUPERFAMILY L domain-like 180 452 - -
Trre16g04533 778 ProSiteProfiles Protein kinase domain profile. 542 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04533 778 Gene3D Transferase(Phosphotransferase) domain 1 621 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04533 Trre-Chr16 49924501 49927292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04533 8 754 Receptor kinase-like Gene Family AT4G08850 43.188 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre16g04533 Pkinase 7.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04533 - - tpra:123910542 1100.12