Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04515 ATGGCACTTAGAAGCGTTAGCATATGCAAACCCCAAATTGTATTGTTTCCATGTTCTACAAATTTCAACCAATCAATCTCGGAAATCACAATTTCAAAGCCAACCATATTTCCAAACACACTTTCACTATCAATTTCTTCCTCCACCGCTCTTCGCAATGCGCCTATTCCATTATTCTGCTCCACCTCCACCTCTTCCGTCCAAACTAATAATATGTCTTCAACCAAAATCTTCATTAAAGGGCTTTCTCTCGCCACCTCTGAAGTGCAGTTAACGGAGGTGTTTTCAGTGTTTGGTGAAGTTACTCAAGTCAAGCTTTTGATAGATAAGGAATCTGGGAAGTCTCTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCGCAATTGGCTGCAAAAAAGATGAATGGAAAGTTTTTTTTTGGCAGGTTTATTTATCTTACAATTGCAAAGCCTGGATCATCAAAAAGTTCGAAGAAGACAACAGCCTACAAATTTTAA 504 0.3849 MALRSVSICKPQIVLFPCSTNFNQSISEITISKPTIFPNTLSLSISSSTALRNAPIPLFCSTSTSSVQTNNMSSTKIFIKGLSLATSEVQLTEVFSVFGEVTQVKLLIDKESGKSLGFAYIWFVKEESAQLAAKKMNGKFFFGRFIYLTIAKPGSSKSSKKTTAYKF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04515 167 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 153 IPR000504 GO:0003723
Trre16g04515 167 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 60 161 - -
Trre16g04515 167 SMART rrm1_1 76 149 IPR000504 GO:0003723
Trre16g04515 167 Gene3D - 56 165 IPR012677 -
Trre16g04515 167 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 146 IPR000504 GO:0003723
Trre16g04515 167 SUPERFAMILY RNA-binding domain, RBD 59 157 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04515 Trre-Chr16 49823049 49825162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04515 77 153 Eukaryotic Initiation Factors Gene Family AT3G11400 37.662 1.71e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04515 - - psat:127073405 197.593