Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04512 ATGATGAATATATTTTCGGGTGCTGTTTCTTGCAAACCCCTAGTGAGTTTCCAACCGGCGCTAACGGATAATAACAATTCATTGTTTCAACAAAAACATCGTAATCGTAATAACAATAAAGAGAAAGTTGTTGTTATCATGGGTGCTACCGGAACCGGGAAATCCAAGTTGGCAATTGATATAGCAACACATTTTTCACCGGCTGAGATTATCAATTCCGACAAAATTCAAGTTTACAAAGGACTTGATATAACAACAAACAAAGTCACCGATGAAGAGTGTCGTGGGGTCCACCATCATTTACTTGGAGCCGTTGATCCTAATTTGAGTTTCACATCCAACGATTTTTGTGAACACGCGACGGAAAAAGTTGATTCTATTGTAGCAAGAAATGGGTTACCTATTATAGCCGGTGGATCGAATTCGTACATTGAAGCTTTGGTTAATCATTATCCTGAGTTTCGTACAAGGTACGAATGTTGTTTTCTTTGGGTTGATGTTTCATTTCCCGTGCTTCATTCGTCGTTATCCGCACGAGTTGATCGTATGATTGAAGATGGTCAAGTCAATGAAGTTCGTGAATTTTTTGACGAAAAAAATCGTGATTACACGAGAGGGATACGAAGAGCCATTGGTGTGCCGGAATTTGACGAATTTTTTAGAGCTGAGTTAGATGGAAGAGTTGATGAAAGAACCATGAAGATGCTTCTAGAAGTTGCTATTGATGCTCTTAAGATGAATAATATTAAGCTTGCAAATAGACAAGTTTGGAAGATTCATAGGCTTTATGGTATGTGGAAAAGAAACATGCACCGTCTTGATGCTACGGATGTTGTTCTTAAGGAAGGAAATTGGGAGGATTGTGTTTTGACTAAGAGTCTTAGGATTGTTCATAAATTTCTATACGAGGATAGTTACAATTCTCGTGTTGGTGGTGGTTGCGGTGTTGGATCATCAATCGTCTCTTCAAGTGTGAGTCATCAATTCATATAA 993 0.3847 MMNIFSGAVSCKPLVSFQPALTDNNNSLFQQKHRNRNNNKEKVVVIMGATGTGKSKLAIDIATHFSPAEIINSDKIQVYKGLDITTNKVTDEECRGVHHHLLGAVDPNLSFTSNDFCEHATEKVDSIVARNGLPIIAGGSNSYIEALVNHYPEFRTRYECCFLWVDVSFPVLHSSLSARVDRMIEDGQVNEVREFFDEKNRDYTRGIRRAIGVPEFDEFFRAELDGRVDERTMKMLLEVAIDALKMNNIKLANRQVWKIHRLYGMWKRNMHRLDATDVVLKEGNWEDCVLTKSLRIVHKFLYEDSYNSRVGGGCGVGSSIVSSSVSHQFI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04512 330 Pfam IPP transferase 77 154 - -
Trre16g04512 330 Pfam IPP transferase 155 256 - -
Trre16g04512 330 FunFam Adenylate isopentenyltransferase 5, chloroplastic 169 270 - -
Trre16g04512 330 Gene3D - 40 301 IPR027417 -
Trre16g04512 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 203 IPR027417 -
Trre16g04512 330 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 40 301 IPR039657 -
Trre16g04512 330 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 169 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04512 Trre-Chr16 49794883 49795875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04512 156 309 C2H2 Transcription Factor Family AT2G27760 29.282 1.38e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04512 K10760 - gmx:100812928 424.091