Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04503 ATGGGTGGTTCATGGAGTAACGGTAATAACAGGAACACAAGAAGAAGAAACAGTTACCATGAACACTATCCACCACCACCACCTCCTCCAACATACTATTATCATTACTCTTCTCAGCCTCTTATGCCACAACCACCTCAAGGTTACTTTCCTCCTCCTCCTCTTCCTCATCATCAGTACTACTCAAATGGATACACTCCTCAGTTTCAGAATCATCACCCTCCTTTCCATGCAACAACAAATACTCAACTATCTGATGTAGATTTGAATGTAAATGTTGTTCAACCTCTACCACTTCCACCACCACCTCCTTCTGAAACCACTAAGAAAGTAAGGAATGATGTTAACTTGCATAAACACACTCTGCAGCTTCATCTTGATCCCAACAATCCCCATCACCACTTGATTTCTTTCGATTTCGATGCCCTTTTCGATGGCAGAATTACGATCTTCTACATAGCCAGAGAAGAAGAACATAAATGTAGGTTTTTTCCTCTATTTCCCGAAGCATTTGAACCGATCACGTTTCCATTCGAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCATCAGGAACAGGCATTGATTTAGGTTTCTTTGAGTTGGACGATCTTTCAAACCATTCACCTGAAGAAGATGTATTTCCCCTTGTGATATGTGCCGAAACAACCCCTTTGGAAGATCATGAAAATCCTACTAGCTCCTTAGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAATCGATGGCAATGGTCCTTTTCAGGTTAAAGTTGTCAGGCAGATTCTATGGATCGATCAAGTTCGTTATGAGCTCAGAGAGTTATATGGAATTGGTAACTCCACAGCACCTGATTTCGATCGCAATGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGTGAGTGTGCAAAAGCTTTGCTGTTACAATCAGATAAATGCCCTATATGCCGCCAAGCTATCGAGGAACTTATAGAGATCAAGATAAACAATGGCGACCAATGA 1065 0.4197 MGGSWSNGNNRNTRRRNSYHEHYPPPPPPPTYYYHYSSQPLMPQPPQGYFPPPPLPHHQYYSNGYTPQFQNHHPPFHATTNTQLSDVDLNVNVVQPLPLPPPPPSETTKKVRNDVNLHKHTLQLHLDPNNPHHHLISFDFDALFDGRITIFYIAREEEHKCRFFPLFPEAFEPITFPFEKGVGQKFCQPSGTGIDLGFFELDDLSNHSPEEDVFPLVICAETTPLEDHENPTSSLVDASPHMQITQAVLEKIDGNGPFQVKVVRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALLLQSDKCPICRQAIEELIEIKINNGDQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04503 354 SUPERFAMILY RING/U-box 298 344 - -
Trre16g04503 354 SMART ring_2 299 337 IPR001841 -
Trre16g04503 354 ProSiteProfiles Zinc finger RING-type profile. 299 338 IPR001841 -
Trre16g04503 354 MobiDBLite consensus disorder prediction 1 38 - -
Trre16g04503 354 CDD mRING-HC-C3HC5_MGRN1-like 297 338 IPR045195 -
Trre16g04503 354 Pfam Zinc finger, C3HC4 type (RING finger) 297 343 - -
Trre16g04503 354 PANTHER MAHOGUNIN 1 348 IPR045194 GO:0061630
Trre16g04503 354 FunFam probable E3 ubiquitin-protein ligase LOG2 283 348 - -
Trre16g04503 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 348 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04503 Trre-Chr16 49739049 49740710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04503 106 354 C3H Transcription Factor Family AT3G06140 60.800 9.97e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04503 - - psat:127073410 516.153