Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04500 ATGGACGCAACATCAGAAGCTATGAATCAATTCGATGAATCGATGAAGAAACAAATAGCATTACTTTTGAAGGTTGTGCTTTTAAATAAATCATTGAAAGAGGATAATGTTCCTTGCGAAATTGATCAGGGTCTCTATTTGGGTTCGGTTGGTTCTGCGGCGAACAAGGTTGCTTTGAAAAATGTTAATGTTACTCATATTTTGACTGTGGCTGGGAAGATTGCACCTGCTCATCCTGTCGATTTCGTCTATAAAGTTATAGATGTTGCTGACAAAGAGGATACAGACTTAAAACAATACTTCAACGAGTGTTTTGATTTTATTGACGAAGCCAAAAAAAATGGTGGATATGTTTTGGTTCACTGTTATGCTGGAAGATCAAGGAGTGTGACTATCATTGTGGCATACCTGATGAAGTCTCGTGGAATGAGCTTATCTGAAGCTCTGCAACATGTAAAGAATAAAAGACCACAAGCAGCTCCAAATCGCGGCTTCATTCGTCAGCTGGAAGACTTTGAGAAATCTCTTCAAGGTGAAAACTGCATTAATCTTAAATAG 558 0.3817 MDATSEAMNQFDESMKKQIALLLKVVLLNKSLKEDNVPCEIDQGLYLGSVGSAANKVALKNVNVTHILTVAGKIAPAHPVDFVYKVIDVADKEDTDLKQYFNECFDFIDEAKKNGGYVLVHCYAGRSRSVTIIVAYLMKSRGMSLSEALQHVKNKRPQAAPNRGFIRQLEDFEKSLQGENCINLK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04500 185 FunFam Dual specificity phosphatase 12 39 183 - -
Trre16g04500 185 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Trre16g04500 185 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 32 176 - -
Trre16g04500 185 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
Trre16g04500 185 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 179 IPR029021 -
Trre16g04500 185 CDD DSP 38 171 - -
Trre16g04500 185 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Trre16g04500 185 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Trre16g04500 185 Gene3D Protein tyrosine phosphatase superfamily 31 182 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04500 Trre-Chr16 49682662 49684906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04500 40 178 Protein tyrosine phosphatase (PTP) family AT3G06110 60.432 9.66e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04500 - - gmx:100306342 260.381