Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04499 ATGGACGCAACATCAGAAGCTATGAATCAATTCGATGAATCGATGAAGAAACAAATAGCATTACTTTTGAAGGTTGTGCTTTTAAATAAATCATTGAAAGAGGATAATGTTCCTTGCGAAATTGATCAGGGTCTCTATTTGGGTTCGGTTGGTTCTGCGGCGAACAAGGTTGCTTTGAAAAATGTTAATGTTACTCATATTTTGACTGTGGCTGGGAAGATTGCACCTGCTCATCCTGTCGATTTCGTCTATAAAGTTATAGATGTTGCTGACAAAGAGGATACAGACTTAAAACAATACTTCAACGAGTGTTTTGATTTTATTGACGAAGCCAAAAAAAATGGTGGATATGTTTTGGTTCACTGTTATGCTGGAAGATCAAGGAGTGTGACTATCATTGTGGCATACCTGATGAAGTCTCGTGGAATGAGCTTATCTGAAGCTCTGCAACATGTAAAGAATAAAAGACCACAAGCAGCTCCAAATCGCGGCTTCATTCGTCAGCTGGAAGACTTTGAGAAATCTCTTCAAGACAAGGTAGTGTAG 546 0.3883 MDATSEAMNQFDESMKKQIALLLKVVLLNKSLKEDNVPCEIDQGLYLGSVGSAANKVALKNVNVTHILTVAGKIAPAHPVDFVYKVIDVADKEDTDLKQYFNECFDFIDEAKKNGGYVLVHCYAGRSRSVTIIVAYLMKSRGMSLSEALQHVKNKRPQAAPNRGFIRQLEDFEKSLQDKVV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04499 181 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Trre16g04499 181 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 177 IPR029021 -
Trre16g04499 181 Gene3D Protein tyrosine phosphatase superfamily 31 180 IPR029021 -
Trre16g04499 181 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
Trre16g04499 181 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Trre16g04499 181 CDD DSP 38 171 - -
Trre16g04499 181 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Trre16g04499 181 FunFam Dual specificity phosphatase 12 39 180 - -
Trre16g04499 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 32 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04499 Trre-Chr16 49682662 49685552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04499 40 177 Protein tyrosine phosphatase (PTP) family AT3G06110 60.145 8.72e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04499 - - gmx:100306342 256.144