Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04492 ATGTTTCCCAAACATTTTGCTATCTTCTTTCTCTTCATATCTCTTTCATCTGCTGCAGACACCACTTCTTGGATCAGAGCCGGTTATTACTATTCTGGCAGTGAAATTTCAGCTTCAGACATTAAATCAACACTCTTCACACATCTCTTATGTGCTTTTGCTTTTATAAACTCCACAGATTACAACATCTTCATAAACTCATCTGAGGAACACAAATTCTCCATCTTCACTGACACAGTAAAGCTTCAAAACCCATCTGTTACAACTCTTCTGTCAATCTACACTGGAAGAGAAAACTCTTCACTTTTTGACTCAATGATAAACCAATCTTCTTATAGAAAATCTTTCATTCATTCTTCCATTAATACAGCAAGAAAATATGGATTTCATGGCATAGACCTTTGTGGTGTCTTACCAAAACAAGGTGAAGAAGTTGCAAATTTGGCAACCCTTTTGAAAGAGTGGCGAATTGCGATTACTTCTGAAGCAAGAAACAGTAAAACATTAGAGTTAGTGTTAGTGATGGCTGGTTATTACATCAAAGCTTCAGATTCTATTAATTACCCTTTTGAATCAATGCAGAAGAATTTGGATTGGGTTCATTTTGTTGCATATGATTATTATCTTCCTAAAAGGGACGGTGTCACAGGTTTTCATGCAGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAATGGAGAAAAAGAGGATTTTCTTCTAACAAACTTGTAATTGGTTTGCCTTATCATGGATTTGCATGGACACTTGTGAAACAAGGTGAAGGTGGTGTTGGAAAAGCAGCTTCTGGACCTGCTATTACATTGGATGGTTCAATGGCTTATAAGTTGATAAAAAGTTATATTAGAAGCTTTGGTGATGGAGTGGTTTCACTCTATAATGATACTTTTGTGGTGAATTACTTCACTGTTGCTTCCACTAATTGGATTAATTTTGATGATGTGGAAGTTATTATAGAAAAAGTTTCATATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTTCTTTCAAAGGCAGCTTATGAAGTAGATGAAGATCATCATAACAGAAGGTTGCTGATAATTGTTCTGCTTACTACTTTGACTACTGCACTTCTCTTAGGAATATTAGTATTTTGCTACTACCACCAAGGAACAATGACAACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTTGATGAAAATGGTTCTGATTTAATAGTATTTAGTTATCTCGCAATTAAAGTAGCAACAGATAATTTCTCTGAAGAAAATAAGCTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACGGAAGGGACAAGAAATAGCGGTGAAAAGACTATCAGAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTCAGACTTTTGGGTTACTGCACAAAAACGAATGAGAAGCTTCTCATTTATGAATATCTCCCAAACAAAAGCTTAGATCATTTTCTCTTAGATCCGAGCAAATCAATTCTACTAGATTGGAGGAAGCGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGCGATCTTAAAGCTAGTAACGTTTTATTAGACCATGAAATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGGAAATATGAACTTGAAGCAAACACAAGCAGAATCGTGGGAACATATGGGTACGTGCCCCCTGAGTATGTCAGAAAAGGCATATATTCGCCCAAGTACGATGTTTATAGTTTTGGGGTACTTCTCTTGCAAATCATAAGTGGAAAGAGAACTTCACGTTATTACGGCCCACATGAAAATATGAACCTTTTGGAATACGCATATGAGTTGTGGACGGAAGGAAGAGGTGCGGAGTTTTTCGACCCTTCATTAGATGATACAACATCACATTGCAAAATAATGAGATGCATGCAGATAGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAAAATGAAGGTGCAGAAGTTGGTACACCCAATGTGCCCGCTTTTTCGATGAAAAAACATGAAGATGATAATGGAGATACTTCTAACTCTGGATTCAAATTTTCTTCAATTAATGATGTTACAATATCTCAAATGGTACCAAGATAA 2292 0.3621 MFPKHFAIFFLFISLSSAADTTSWIRAGYYYSGSEISASDIKSTLFTHLLCAFAFINSTDYNIFINSSEEHKFSIFTDTVKLQNPSVTTLLSIYTGRENSSLFDSMINQSSYRKSFIHSSINTARKYGFHGIDLCGVLPKQGEEVANLATLLKEWRIAITSEARNSKTLELVLVMAGYYIKASDSINYPFESMQKNLDWVHFVAYDYYLPKRDGVTGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGFAWTLVKQGEGGVGKAASGPAITLDGSMAYKLIKSYIRSFGDGVVSLYNDTFVVNYFTVASTNWINFDDVEVIIEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAYEVDEDHHNRRLLIIVLLTTLTTALLLGILVFCYYHQGTMTTITRMIYKLRIYLSAAEEDLDENGSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKTNEKLLIYEYLPNKSLDHFLLDPSKSILLDWRKRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMARIFGKYELEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGPHENMNLLEYAYELWTEGRGAEFFDPSLDDTTSHCKIMRCMQIALLCVQENSADRPSMLEVDSLLKNEGAEVGTPNVPAFSMKKHEDDNGDTSNSGFKFSSINDVTISQMVPR 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04492 763 Gene3D - 254 323 IPR029070 -
Trre16g04492 763 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 368 IPR001223 GO:0005975
Trre16g04492 763 SMART serkin_6 444 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04492 763 MobiDBLite consensus disorder prediction 725 747 - -
Trre16g04492 763 FunFam Uncharacterized protein 419 519 - -
Trre16g04492 763 Pfam Protein kinase domain 445 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04492 763 SUPERFAMILY Protein kinase-like (PK-like) 428 713 IPR011009 -
Trre16g04492 763 ProSiteProfiles Protein kinase domain profile. 444 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04492 763 SUPERFAMILY (Trans)glycosidases 25 365 IPR017853 -
Trre16g04492 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Trre16g04492 763 CDD STKc_IRAK 450 717 - -
Trre16g04492 763 Pfam Glycosyl hydrolases family 18 29 352 IPR001223 GO:0005975
Trre16g04492 763 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524
Trre16g04492 763 SMART 2g34 24 352 IPR011583 GO:0008061
Trre16g04492 763 Gene3D Transferase(Phosphotransferase) domain 1 520 724 - -
Trre16g04492 763 Gene3D Phosphorylase Kinase; domain 1 410 519 - -
Trre16g04492 763 Gene3D Glycosidases 39 354 - -
Trre16g04492 763 FunFam Uncharacterized protein 520 724 - -
Trre16g04492 763 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 312 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04492 Trre-Chr16 49612294 49615860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04492 432 763 Receptor kinase-like Gene Family AT4G11530 51.632 2.76e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g04492 Glyco_hydro_18 9.3e-50 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04492 - - tpra:123922687 1385.55