LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04491	ATGTTTTCAAAACATTATGCTACTATATTCCTTGTTGTCTTTGTCTTCTTATCTCTCACATCTCACTCAATTGCAGCAGACACCACTTCCTGGGTAAAAGCAGGTTATCACTATTCTGGCAATGAAAATTCAGCCTCAACAATAAAATCAACACTTTTCACACACCTCTTATGTGCTTTTGCTTTTATAAATTCCACAGATTACAACATCTTCATAAACTCTTCTGAGGAACACAAATTCTCCACCTTCACCAACACAGTAAAACTCCAAAATCCATCTGTTACAACTCTTCTATCAATCTACACCGGAACAGAAAACTCTACACTTTTCAACTCGATGATAAACCATTTTTCGTACAGAAAATCTTTCATTGATTCTTCCATCAATACAGCAAGAAAATATGAATTTCAAGGCATAGACCTTTGTGGAGTCTTACCAATGAAAGGTAAAGAACTTGCAAATTTCGCAACCCTTTTGAAGGAATTGAGAATCGCGATAACTTATGACGCAAGAAAGACTAAAAAGCCAGAGTTAGTTTTGGTGATGGCAGGTTATTATAACAAAGCTTCAGATTCTGTTAGTTATCCTTTTGAATCAATGCAGAAGACTTTGGATTGGGTTCATTTTATTGCATATGATTACGATCTTCCTAAAATGGAGAATATTACGGGTTTTCATGCAGCTTTGTACGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAATGGAGAAAAAGAGGATTTTCTTCTAACAAACTTGTAATTGGTTTGCCTTATCATGGATATGCATGGACACTTGTGAAACGAGTTGCTTCCACTATTTGGATTAATTTTGATGATGTAGAAGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCCAAGGCAGCTTATGAAGTAGATGAAGATCATCATAACAGAAGGTTGCTCATAATTATTCTGCTTACTACTCTGACTAGTGCACTTCTCTTGGGAGTAATAGTATTTTGCTACTACCACCAAGGAACAGTAACCACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTCAATGAAAGTGGTTCTGTTTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAAATAACTTCTCAGAAGAAAATAAGCTAGGAGAGGGTGGATTTGGTGCAGTATACAAGGGAAAATTAAGTAAGGGACAGGAAATAGCAGTCAAAAGGCTATCAGAAACCTCAAATCAAGGACTTGAGGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAGGAATGAGAAGCTTCTGATCTATGAATACCTCCCTAATAAAAGCTTAGATCATTTTCTCTTAGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGCGATCTTAAAGCTAGTAACGTTTTATTAGACCATGAAATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGGAAATATGAACTTGAAGCAAACACAAGCAGAATCGTGGGAACATATGGGTACGTGACCCCTGAGTATGTCAGAAAAGGCATATACTCGCCCAAGTATGACGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATTAGTGGAAAGAGAACTTCACGTTATTATGGCCCACATGAAAATATGAACCTTTTGGAATACGTAACATATGAGTTGTGGACGGAAGGAAGAGGTGTGGAGTTTTTTGACCCGTCGTTAGATGATACAATATTACCTTGCAAAATAATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGAAAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAAGGTACAATTGTTGGTACTCCAAACGTGCCCGCTTTTTCAATGAAGAAACACGAAGACAGCAACGGAGATACTTCTAACTATGGGTTCAAACTTTCTTCAGTCAATGATGTTACAATTTCTCACATGCTACCAAGATAA	2166	0.3647	MFSKHYATIFLVVFVFLSLTSHSIAADTTSWVKAGYHYSGNENSASTIKSTLFTHLLCAFAFINSTDYNIFINSSEEHKFSTFTNTVKLQNPSVTTLLSIYTGTENSTLFNSMINHFSYRKSFIDSSINTARKYEFQGIDLCGVLPMKGKELANFATLLKELRIAITYDARKTKKPELVLVMAGYYNKASDSVSYPFESMQKTLDWVHFIAYDYDLPKMENITGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGYAWTLVKRVASTIWINFDDVEAIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAYEVDEDHHNRRLLIIILLTTLTSALLLGVIVFCYYHQGTVTTITRMIYKLRIYLSAAEEDLNESGSVLIVFGYLTIKVATNNFSEENKLGEGGFGAVYKGKLSKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKRNEKLLIYEYLPNKSLDHFLLDPRKSILLDWRKRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMARIFGKYELEANTSRIVGTYGYVTPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGPHENMNLLEYVTYELWTEGRGVEFFDPSLDDTILPCKIMRCMQVALLCVQENSAERPSMLEVDSLLKNEGTIVGTPNVPAFSMKKHEDSNGDTSNYGFKLSSVNDVTISHMLPR	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04491	721	Pfam	Protein kinase domain	402	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04491	721	Gene3D	Phosphorylase Kinase; domain 1	368	476	-	-
	Trre16g04491	721	SMART	2g34	31	309	IPR011583	GO:0008061
	Trre16g04491	721	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	22	325	IPR001223	GO:0005975
	Trre16g04491	721	SMART	serkin_6	401	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04491	721	SUPERFAMILY	Protein kinase-like (PK-like)	384	671	IPR011009	-
	Trre16g04491	721	Pfam	Glycosyl hydrolases family 18	38	309	IPR001223	GO:0005975
	Trre16g04491	721	ProSiteProfiles	Protein kinase domain profile.	401	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04491	721	FunFam	Uncharacterized protein	376	476	-	-
	Trre16g04491	721	Gene3D	Glycosidases	47	260	-	-
	Trre16g04491	721	Gene3D	Glycosidases	281	311	-	-
	Trre16g04491	721	Gene3D	-	261	271	IPR029070	-
	Trre16g04491	721	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	311	717	-	-
	Trre16g04491	721	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	477	680	-	-
	Trre16g04491	721	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	522	534	IPR008271	GO:0004672\|GO:0006468
	Trre16g04491	721	SUPERFAMILY	(Trans)glycosidases	34	310	IPR017853	-
	Trre16g04491	721	CDD	STKc_IRAK	407	675	-	-
	Trre16g04491	721	Gene3D	Transferase(Phosphotransferase) domain 1	477	679	-	-
	Trre16g04491	721	ProSitePatterns	Protein kinases ATP-binding region signature.	407	429	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04491	Trre-Chr16	49605633	49609199	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g04491	389	721	Receptor kinase-like Gene Family	AT4G11530	50.592	1.00e-111	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre16g04491		Glyco_hydro_18	2e-45	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04491	-		-	tpra:123922687	1224.15