Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04489 ATGTTTTCAAAACACATTGCTACTATCTTCTTCCTTGTCTTCCTCTCTCTCACATCTCACTCAATTGCAGCAGACACCACTTCCTGGATAAAAGCAGGTTATTACTATTCCGGCAGTGAGATTTCAGCTTCAGACATTAAATCAACACTCTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCAAAATCCTCACTAGCACAGTAAAACTCCAAAATCCATCTGTTACAACTCTGCTGTCAATCTACACTGGAAGAGAAAACTCTTCACTTTTTGACTCAATGATAAACCAATCTTCTTATAGAAAATCTTTCATTCATTCTTCCATTAATACAGCAAGAAAATATGGATTTCATGGCATAGACCTTTGTGGTGTCTTACCAAAACAAGGTAAAGAACTTGCAAATTTGGCAACCCTATTGAAAGAGTGGCGAATTACGATTACTTCTGAAGCAAGAAACAGTAAAAAATTAGAGTTGGTGTTAGTGATGGCAGGTTATTATATCAAAGCTTCAGATTCCATTAATTACCCTTTTGAATCAATGCAGAAGAATTTGGATTGGGTACATTTTGTTGCATATGATTATTATCTTCCTAAAAGGGACAGTGTCACAGGTTTTCATGCAGCTTTGTACGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAATGGAGAAAAAGAGGTTTTTCTTCTAACAAACTTGTAATTGGTTTGCCTTATCATGGATTTGCATGGACACTTGTGAAACAAGGTGAAGGTGGTGTTGGAAAAGCAGCTTCTGGACCTGCTATTACATTGGATGGTTCAATGGCTTATAAGTTGATAAAAAGTTATATTAGAAGCTTTGGTGATGGAGTGGTTTCACGTTATAATGATACTTTTGTGGTGAATTACTTCACTGTTGCTTCCACTAATTGGATTAATTTTGATGATGTGGAAGTTATTATAGAAAAAGTTTCATATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTTCTTTCAAAGGCAGCTTATGAAGTAGATGAAGATCATCATAACAGAAGGTTGCTGATAATTGTTCTGCTTACTACTTTGACCACTGCACTTCTCTTAGGAATATTAGTATTTTGCTACTACCACCAAGGAACAATGACAACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTTGATGAAAATGGTTCTGATTTAATAGTATTTAGTTATCTCGCAATTAAAGTAGCAACAGATAACTTCTCTGAAGAAAATAAGCTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACGGAAGGGACAGGAAATAGCGGTAAAAAGACTATCAGAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAACGAGATTGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTCTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATATCTTCCAAACAAAAGCTTAGATCATTTTCTCTTGGATCCAAGCAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGCGATCTTAAAGCTAGTAATGTTTTATTAGGCCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGAAAATATGAACTTGAAGCAAACACAAGCAAGATCGTGGGAACATATGGGTACATACCCCCTGAATATGTCAGAAAAGGCATATACTCACCCAAATACGACGTTTATAGTTTTGGAGTCCTTCTTTTGCAAATCATAAGTGGAAAAAGAACTTCACGTTATTACGGTCCACATGAAAATATGAACCTTTTGGAATACGCATATGAGCTGTGGATGGAAGGAAGTGGTGCGGAGTTTTTCGACCCTTCATTAGATGATACAACATCACCTTGCAAACTAACGAGATGCATGCAGATAGCTCTTTTGTGTGTTCAAGAGAACTCAAGTGATAGACCTTCCATGTTAGAAGTTGATTCATTGCTCAAGAATGAAGGTGCAGATGTTGGTACACCCAACATGCCCGCTTTTTCGATGAAAAAACAAGAAGATGATAAGGGAGATACAACTAAGTCTAAGTTCAAATTTTCTTCAATCAATGATGTTACAATTTCTCAGATGGTACCAAGATAA 2262 0.3621 MFSKHIATIFFLVFLSLTSHSIAADTTSWIKAGYYYSGSEISASDIKSTLFTHLLCAFAFINSKILTSTVKLQNPSVTTLLSIYTGRENSSLFDSMINQSSYRKSFIHSSINTARKYGFHGIDLCGVLPKQGKELANLATLLKEWRITITSEARNSKKLELVLVMAGYYIKASDSINYPFESMQKNLDWVHFVAYDYYLPKRDSVTGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLVIGLPYHGFAWTLVKQGEGGVGKAASGPAITLDGSMAYKLIKSYIRSFGDGVVSRYNDTFVVNYFTVASTNWINFDDVEVIIEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAYEVDEDHHNRRLLIIVLLTTLTTALLLGILVFCYYHQGTMTTITRMIYKLRIYLSAAEEDLDENGSDLIVFSYLAIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPSKSILLDWRKRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLGHEMNPKISDFGMARIFGKYELEANTSKIVGTYGYIPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGPHENMNLLEYAYELWMEGSGAEFFDPSLDDTTSPCKLTRCMQIALLCVQENSSDRPSMLEVDSLLKNEGADVGTPNMPAFSMKKQEDDKGDTTKSKFKFSSINDVTISQMVPR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04489 753 FunFam Uncharacterized protein 409 509 - -
Trre16g04489 753 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 510 712 - -
Trre16g04489 753 SUPERFAMILY (Trans)glycosidases 30 355 IPR017853 -
Trre16g04489 753 Pfam Glycosyl hydrolases family 18 34 342 IPR001223 GO:0005975
Trre16g04489 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Trre16g04489 753 MobiDBLite consensus disorder prediction 709 736 - -
Trre16g04489 753 Gene3D - 244 313 IPR029070 -
Trre16g04489 753 Gene3D Transferase(Phosphotransferase) domain 1 510 714 - -
Trre16g04489 753 SMART 2g34 29 342 IPR011583 GO:0008061
Trre16g04489 753 Gene3D Phosphorylase Kinase; domain 1 400 509 - -
Trre16g04489 753 SUPERFAMILY Protein kinase-like (PK-like) 418 703 IPR011009 -
Trre16g04489 753 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 358 IPR001223 GO:0005975
Trre16g04489 753 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 749 - -
Trre16g04489 753 SMART serkin_6 434 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04489 753 Pfam Protein kinase domain 435 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04489 753 CDD STKc_IRAK 440 707 - -
Trre16g04489 753 Gene3D Glycosidases 44 344 - -
Trre16g04489 753 ProSiteProfiles Protein kinase domain profile. 434 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04489 753 ProSitePatterns Protein kinases ATP-binding region signature. 440 462 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04489 Trre-Chr16 49582411 49585705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04489 422 753 Receptor kinase-like Gene Family AT4G11530 51.632 1.95e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g04489 Glyco_hydro_18 4.7e-46 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04489 - - tpra:123922687 1340.87