Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04483 ATGTCAGGTTGGGACGAAGGAGGCGTTTACTACAGCGATCAAGCACACTCATGGGACGACGGCCGTGGCGAAGGTGAAGCCACCGCTTCCAATCATACTATCCTCCAAAAGTTCAAAGAATTCATCCGAAATTTCGAGACCGGTAACAATGTTTTCCCTTACAGAGAGAGACTTCTTCATAATCCTAAGTTCCTTGTTGTTGATATGGAAGATCTCGACTCGTTTGATCCTGATCTTCCTTCTAAACTCCGATCTTCTCCTGCCGATATCCTCCCACTGTTTGAAACTGCCGCGGCACAGGTTTTGGTGAATTTGAAGACTAAGGTGGCTGGAGACACTGGTGTTATGGAAGATGCTGCTCCTGGTGATGTACAGATTTTACTTACTTCTAAGGAGGATTCTGTTTCAATGAGATCGATCGGGGCTCAATACATATCAAAGCTTGTTAAAATTGCTGGGATAACTATTGCTGCATCCAGGACTAAGGCAAAGGCAACATATGTGACTTTGATATGTAAGAATTGTAAGAAAGGGAAGCAAGTTCCGTGTCGGCCAGGACTTGGGGGAGCAGTTGTTCCTCGTTCATGTGATCATGTTCCTCAGCCTGGAGAAGAACCTTGTCCAATAGATCCGTGGCTTATTGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGCTGCAAGAAAATCCAGAGGATGTTCCAACCGGAGAGCTTCCTAGGAACCTGCTCCTTTCTGTTGATCGACATCTTGTTCAAACAGTAGTTCCTGGCTCAAGATTAACAATCATTGGAATCTATAGTATTTTTCAGGCTTCCAACTCTAACACATCCAACAAAGGAGCAGTTGCAGTTAGACAGCCTTATGTTAGGGTTGTAGGAATAGAAGATGCAAATGAAGCCAAGTCTCGAGGTCCCACTGCGTTTACAACAGAAGAAATTGAAGAGTTCAAAAAATTTGCAGCTGAGCCTGCTGCATACAAAAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGATGATGTTAAAAAGGCTGTGGCCTGTCTTCTTTTTGGAGGGTCAAGAAAGCATTTGCCAGATGGGGTGAGATTAAGAGGTGATATCAATGTGCTACTTCTTGGGGATCCATCTACAGCGAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACTGCTCCTATTGCTGTATATACTTCTGGGAAAGGCTCGTCAGCTGCTGGCCTCACAGCCTCTGTAATCCAAGACAGCAGTACTCGTGAGTTTTATCTTGAAGGCGGAGCCATGGTTTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAGACCTGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACCGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAACCCTCCATCAGGGCGTTATGATGACCTCAAGACTGCACAGGACAACATCGATTTACAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATAGTGAAAGACATCAGAATGTACGCACAAGATAAGATAATAGCTAGTCATATCATAAAGGTTCATTCATCAGCCAGTGCAACGAGGGGTGAGAATAGGACTCCTGTTTCCAAAGAAGAAAATTGGCTGAAGAGGTATTTACAGTATTGTCGAACTGAATGCCACCCCCGTCTATCGGAAGCTGCAGCAAGATTACTACAAAATAATTATGTGCAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTAAGGTTGAGTGAGGCACTTGCAAAGATGAAACTAAATCATCTTGCTACTGAGGAGAATGTGCAAGAAGCCATAAGGCTTTTCACCGTGTCTACAATGGATGCAGCGAAGTCAGGAATAAACCAACAAATAAATCTCTCACCTGAAATGGCACGTGATATACAGCAAGCAGAAAATCAGATAAAGAGAAGAATCGGGATTGGAAACCACATATCAGAAAGAAGACTGATTGATGACCTCGGCAGAATGGGAATGAATGAATCTATTGTAAGAAGAGCCCTTCTAATCATGCACCAGAGAGACGAAGTAGAGTACAAGCGAGAAAGGCGTGTTGTATTTAGGAAAGCATAA 2199 0.4311 MSGWDEGGVYYSDQAHSWDDGRGEGEATASNHTILQKFKEFIRNFETGNNVFPYRERLLHNPKFLVVDMEDLDSFDPDLPSKLRSSPADILPLFETAAAQVLVNLKTKVAGDTGVMEDAAPGDVQILLTSKEDSVSMRSIGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAVVPRSCDHVPQPGEEPCPIDPWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIIGIYSIFQASNSNTSNKGAVAVRQPYVRVVGIEDANEAKSRGPTAFTTEEIEEFKKFAAEPAAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYAQDKIIASHIIKVHSSASATRGENRTPVSKEENWLKRYLQYCRTECHPRLSEAAARLLQNNYVQIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLNHLATEENVQEAIRLFTVSTMDAAKSGINQQINLSPEMARDIQQAENQIKRRIGIGNHISERRLIDDLGRMGMNESIVRRALLIMHQRDEVEYKRERRVVFRKA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04483 732 Pfam MCM AAA-lid domain 558 647 IPR041562 -
Trre16g04483 732 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 CDD MCM5 331 647 - -
Trre16g04483 732 Gene3D - 164 222 - -
Trre16g04483 732 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 31 690 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 Pfam MCM N-terminal domain 36 107 IPR027925 -
Trre16g04483 732 Pfam MCM OB domain 137 272 IPR033762 -
Trre16g04483 732 FunFam DNA helicase 29 117 - -
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 642 659 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 138 153 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 288 300 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 164 176 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 566 581 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Trre16g04483 732 SUPERFAMILY Nucleic acid-binding proteins 37 293 IPR012340 -
Trre16g04483 732 Gene3D - 137 272 IPR012340 -
Trre16g04483 732 Gene3D - 309 667 IPR027417 -
Trre16g04483 732 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 SMART mcm 133 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre16g04483 732 FunFam DNA helicase 309 662 - -
Trre16g04483 732 FunFam DNA helicase 164 222 - -
Trre16g04483 732 Gene3D - 29 114 - -
Trre16g04483 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 648 IPR027417 -
Trre16g04483 732 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Trre16g04483 732 Coils Coil 579 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04483 Trre-Chr16 49553556 49559089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04483 1 732 Core DNA Replication Machinery Family AT2G07690 77.186 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04483 K02209 - gmx:100779483 1285.01