Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04482 ATGCCGGACGGAGAATCATCCACCGCCGTTACTGATCAGTTTTCTGATCAAGGGAACTCGTTGAGTCTTTCCACAGTCAAAAACCATGATGACTCTGTCATAAAAGATCCAACCAAAATTGCAAGAAAGTATCAATTGGCGTTATGCAAAAAAGCTATGGAGGAAAATATCATTGTTTATTTGGGGACAGGATGTGGGAAGACACACATTGCTGTGCTGCTTATGCATGAAATGAGACATTTGATAAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCAACCGTTGCTTTAGTTCATCAGCAAGCGGAGGTTATATCCGACTCTACTGATTTTGAAGTTGGAACTTGCTGCGGGAGTAACAAGCGCTCCAAATCTCATCAACATTGGGAGGAGGAGATTGAACAATTTGAGGTTCTTGTTATGACCCCGCAAATATTACTCCACAATTTATCTCATTGTTTCATCAAGATGGAGATGATCGCACTTTTGATATTTGACGAATGCCATCATGCTCAAGCCAAAAGCAGCCATCCTTATGCAGAAATCATGAAGGTCTTCTATAAAAGTAATTCCACAAAAGTTCCCCGCATATTTGGTATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTACTGAAGCGAATCTACCAAAAAGCATCAACAGTCTTGAATTAATCCTTGATGCTAAGGTATACTCAGTTAAAGATGAGGCATTGAAAGCTTTTGTAACCACTCCTGAAGTTAATATATATCATTATAGTTCGACCACAAATATGGAAACTAGCTTGGAGTGGAAACTTGAGGAGTTTAAATGCCAGTGCACAGAAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAACCGCGTACATGATAATGTGGTCTTCTGTCTCAGGAGTCTTGGCTTTTGGGGAGCTTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCGTTCTGAGAGGCATGCATTAGTTGAGGCAGAAGGAATTTCAAGCGACGAGTCTGTATGTGATAAATATCTTGCTAAGACAGCTGAACTATTTCATTCCAAATGCGGCAGTGTTTCTGATCCATCTTCCTGGGAAATATTAAAAGAGCCTTTTTTCTCAGCAAAGCTATTACGTCTCATTGGGATACTGACCACTTTCAGGTTGCAACAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGAGCCCTGTCATTCATACTACGGCAGCTTGAGCTTCTAAGACACTGGAAGAGTGATTTTCTTGTAGGAGTTCATTCTGGAGTGAAGATTATGTCACGGAAGGCCATTAATACGATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCCACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCGTTCAGAATATGCATTTTTAGTTGACAGTGGCAATGAGAAGGAATTAGACATAATTGCTGGTTTTGAGAAAGATGAATTTCGAATGAATACGGAAATTACTGTCCGAACATCCAGTGAGACACACAACATCCCTGTGGAAAAAATATTCAAAGTTGAATCATCTGGTGCCTCAGTCAGTGCTGCATATAGTATCCAATTGCTTCACCAGTATTGTTCAAAGCTTCCACGTGATGAGTTCTTTGATCCCCGGCCAAATTTCTTTTACTTTGATGATTTAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTTCGATACACCAAATTGTCAGTACGCCGCAGTTGTCTACGGAAGCTGCAAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTGCTTTGAATGATTGTCTCTTGCCAGGGCAAAATGATACAAAGACAGAGAAGGTTTTGGGCTCTTCTGATTCCGATGAGTGTGAAGATGACCATTCAAGAGGGGAGTTACATGAGATGCGAGTTCCTTCTGTCTTTAGACAGTCATGGAAAAATGAGCAGAAAACTGTCCGTCTCAACTCTTACTACATTAAATTTTGCCCTACTCCAGAGGATAGGGTCTATAAAAAGTTTGGTTTATTCATCATGACTCCTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCACAGTAGATCTGTGATGACAAAGTTTATGCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTTAGAGTTATCCTTGATAGATTAGAGTTTGTTTCTAAGTTTGTAGAATTGGGCGCTGAATCTCGCACAAACACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATACGACGATGTGATGAAAGAATACGACGATGTGATGAAAGTAGATTGGGAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGTAGATACTTTAGATAAAAAGGTTACCCCTTTGAATAATCATCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGCTTAGTGTATGTTCCACATACAAAGTTCTTCTATTGTGTCACAGATATTATCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAAACACTTCAAGCTACGTGGACCACTTCAATGAAAAGTATTCCATTAATCTCAAGCGCCCCGGACAACCACTTCTGCATGCAAAACAACTTTTTAATTTGCACAACCTGCTACACGATCGAAAGAATGAGGATGCTGACGAACCTCATGAGCTACAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGTAGTTCCATCTCTTTGCTACCTTCAATCATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCAGCTATCTTCCTCCTTCCCAGAGGCAACTAAAATTAGTGCCCATAGATTTCTAGAAGCTCTCACCACCGAGAAGTGTCAGGAACGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGCGACGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGATCTTACCAGCAAGCGATCCAATGTTGTAAATAATTCCAATTTGCTTAAGTTAGCTATTAGGCGCAATTTGCAGGTCTTTATACGTGATCAGGCATTTGATCCATTACGGTTCTATGCATTAGGCCGTCCTTGCCCTACAGTTTGTACCAAGGAAAATGAAGACAACATACACTTATGTTTAACTTCTGCTGAGGACAAAAGTAGTGCAAGTGCAACTGATATCCGATGTAATAAAAATCACCATTGGTTGTATAGGAAAACAATTGCTGATGTTGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGGTTTAAAGCTGCAGTTTCCTTTCTTGCATGGATTGGCATAGAAGTAAATTTTGAAGCCTCACAACTTGTTAATATTTGCACCGCGAGTGTTGGCTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAGGCAAGTTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCACGGAGGAGGATGTTATCAGAGATTGGAGTTCCTTGGGGATGCTGTTTTAGATTTTCTAATTACGTCGTATCTATATTCAGCATACCCCAGTCTAAAGCCCGGCCAACTGACAGATCTGAGGGCATTGTCTGTCAATAATAAGGCATTCGCCTGTGTGGCCGTGGAACGCTGTTTTGATCAATATCTTCTGTGTGATTCAAAAGAACTGAGCAAGGCAGTCAAAAGGTATGTGGATTACATCAGAAGATCTGTATCAGACAGTGGCAATGACGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCGGGATTTGATTTGAACGAAGTTTGGAAGATCATGACCTCATTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGCCCTGTTAGAGATTTGCAAGAACTGTGCCAATTTAATAATTTGGAATTGCAGCTTCTGGAATCAAAACAAGGTAAAAAGTTCTCAGTTGAAGTCAAAGTGAATGGGGACAGTGTCTGTGAAAAAGTTTGTATCACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCCTCACAGCTACTTTTTTCAAAGTTGAAGGCTCAAGGCTTGAAATTGAAGTCAAAAACTTTGGAAGATGTTTTGAAAACAACAGTTAAGGCGGAACCAAAACTGATTGGCTATGATGAAACCCCCATTGATGTAACGGATACGACCACCATTGGACAGGAAATGGTCAATGGAGATCTATGCGACAATTCTAATCCAGAAATCTTCCGTATCCGGGAGGTATCCGATGCACAGTCCTCGTGTGTGAAACCTGTCGCCCAACGGCTTCAATCTTCTCCTAAGGAAAAGCTTGGTGAAACCAGTCGAAATCGTGATTGTGGCAGTGACTCATCAAAGACAGGAAATGCAAGATCGCGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGCCCACCTTAAGTTATTCACTTGCAAGGCAACGATGGAGATAGAAGAGGCGTCGGGTATGGTTTTCGAGTTTATTGGGGAACCTCTACCGAAGAAGAAAGACGCAGCAGATAGTGCAGCTTCGGCTGCATTTTGGTACCTGCAACAGGAAGGTTACCTGCATAAATGCTAG 4890 0.4115 MPDGESSTAVTDQFSDQGNSLSLSTVKNHDDSVIKDPTKIARKYQLALCKKAMEENIIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVHQQAEVISDSTDFEVGTCCGSNKRSKSHQHWEEEIEQFEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQAKSSHPYAEIMKVFYKSNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLELILDAKVYSVKDEALKAFVTTPEVNIYHYSSTTNMETSLEWKLEEFKCQCTETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGFWGALQASRILLSGDRSERHALVEAEGISSDESVCDKYLAKTAELFHSKCGSVSDPSSWEILKEPFFSAKLLRLIGILTTFRLQQNMKCIIFVNRIVTARALSFILRQLELLRHWKSDFLVGVHSGVKIMSRKAINTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELDIIAGFEKDEFRMNTEITVRTSSETHNIPVEKIFKVESSGASVSAAYSIQLLHQYCSKLPRDEFFDPRPNFFYFDDLGGTVCQITLPSNASIHQIVSTPQLSTEAAKRDACLKAIEELYKLGALNDCLLPGQNDTKTEKVLGSSDSDECEDDHSRGELHEMRVPSVFRQSWKNEQKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTPLPMEAEKLELDLHLAHSRSVMTKFMPFGVVEFNKDEIKMAENFQEMFLRVILDRLEFVSKFVELGAESRTNTSTFYLLLPVILKEYDDVMKEYDDVMKVDWETVKRCLCSPIFRHPVDTLDKKVTPLNNHLQLANGYRSVRDVENSLVYVPHTKFFYCVTDIIYEKNGFSPYKDSNTSSYVDHFNEKYSINLKRPGQPLLHAKQLFNLHNLLHDRKNEDADEPHELQEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHQLSSSFPEATKISAHRFLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSNVVNNSNLLKLAIRRNLQVFIRDQAFDPLRFYALGRPCPTVCTKENEDNIHLCLTSAEDKSSASATDIRCNKNHHWLYRKTIADVVEALVGAFIVDSGFKAAVSFLAWIGIEVNFEASQLVNICTASVGYFPLSAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPSLKPGQLTDLRALSVNNKAFACVAVERCFDQYLLCDSKELSKAVKRYVDYIRRSVSDSGNDGGPKSPKALGDLVESCVGAILLDSGFDLNEVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLLESKQGKKFSVEVKVNGDSVCEKVCITSQNKKEASRIASQLLFSKLKAQGLKLKSKTLEDVLKTTVKAEPKLIGYDETPIDVTDTTTIGQEMVNGDLCDNSNPEIFRIREVSDAQSSCVKPVAQRLQSSPKEKLGETSRNRDCGSDSSKTGNARSRLYELCAAYCWKPPSFECCKEEGPAHLKLFTCKATMEIEEASGMVFEFIGEPLPKKKDAADSAASAAFWYLQQEGYLHKC 1629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04482 1629 Gene3D Ribonuclease III domain 1202 1373 IPR036389 GO:0004525|GO:0006396
Trre16g04482 1629 CDD RIBOc 1015 1174 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 SMART helicmild6 412 502 IPR001650 -
Trre16g04482 1629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 537 IPR001650 -
Trre16g04482 1629 FunFam Endoribonuclease dicer-like protein 36 275 - -
Trre16g04482 1629 SUPERFAMILY RNase III domain-like 1204 1368 IPR036389 GO:0004525|GO:0006396
Trre16g04482 1629 Gene3D - 1553 1622 - -
Trre16g04482 1629 Gene3D Ribonuclease III domain 997 1175 IPR036389 GO:0004525|GO:0006396
Trre16g04482 1629 FunFam Endoribonuclease dicer-like 1 561 657 - -
Trre16g04482 1629 Pfam Ribonuclease III domain 1240 1349 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 Pfam Ribonuclease III domain 1031 1164 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 Gene3D paz domain 859 964 - -
Trre16g04482 1629 SUPERFAMILY PAZ domain 861 964 IPR036085 GO:0005515
Trre16g04482 1629 Gene3D - 41 294 IPR027417 -
Trre16g04482 1629 SMART riboneu5 1013 1184 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 SMART riboneu5 1220 1372 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g04482 1629 SMART PAZ_2_a_3 843 992 IPR003100 GO:0005515
Trre16g04482 1629 Pfam Helicase conserved C-terminal domain 388 500 IPR001650 -
Trre16g04482 1629 SUPERFAMILY dsRNA-binding domain-like 1331 1441 - -
Trre16g04482 1629 SMART DRBM_3 1377 1441 IPR014720 -
Trre16g04482 1629 SMART DRBM_3 1547 1621 IPR014720 -
Trre16g04482 1629 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1376 1442 IPR014720 -
Trre16g04482 1629 ProSiteProfiles Ribonuclease III family domain profile. 993 1164 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 517 IPR027417 -
Trre16g04482 1629 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1546 1620 - -
Trre16g04482 1629 Gene3D - 1374 1449 - -
Trre16g04482 1629 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1546 1622 IPR014720 -
Trre16g04482 1629 SUPERFAMILY RNase III domain-like 1012 1179 IPR036389 GO:0004525|GO:0006396
Trre16g04482 1629 CDD RIBOc 1221 1371 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 FunFam Endoribonuclease dicer-like 1 373 536 - -
Trre16g04482 1629 Pfam DEAD/DEAH box helicase 44 204 IPR011545 GO:0003676|GO:0005524
Trre16g04482 1629 Gene3D Dicer dimerisation domain 561 658 IPR038248 -
Trre16g04482 1629 ProSiteProfiles Ribonuclease III family domain profile. 1205 1349 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 566 656 IPR005034 GO:0016891
Trre16g04482 1629 Pfam Dicer dimerisation domain 566 650 - -
Trre16g04482 1629 SMART ultradead3 37 253 IPR014001 -
Trre16g04482 1629 Pfam PAZ domain 865 987 IPR003100 GO:0005515
Trre16g04482 1629 ProSitePatterns Ribonuclease III family signature. 1240 1248 IPR000999 GO:0004525|GO:0006396
Trre16g04482 1629 Gene3D - 375 536 IPR027417 -
Trre16g04482 1629 MobiDBLite consensus disorder prediction 1516 1545 - -
Trre16g04482 1629 SUPERFAMILY dsRNA-binding domain-like 1545 1626 - -
Trre16g04482 1629 FunFam Endoribonuclease dicer-like 1 1199 1370 - -
Trre16g04482 1629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 224 IPR014001 -
Trre16g04482 1629 PANTHER DICER-RELATED 54 1446 - -
Trre16g04482 1629 CDD DEXHc_dicer 39 238 - -
Trre16g04482 1629 ProSiteProfiles PAZ domain profile. 865 966 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04482 Trre-Chr16 49538979 49551253 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04482 442 532 Eukaryotic Initiation Factors Gene Family AT3G19760 35.417 9.08e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04482 K11592 - gmx:100797277 2465.65