Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04481 ATGCCGGACGGAGAATCATCCACCGCCGTTACTGATCAGTTTTCTGATCAAGGGAACTCGTTGAGTCTTTCCACAGTCAAAAACCATGATGACTCTGTCATAAAAGATCCAACCAAAATTGCAAGAAAGTATCAATTGGCGTTATGCAAAAAAGCTATGGAGGAAAATATCATTGTTTATTTGGGGACAGGATGTGGGAAGACACACATTGCTGTGCTGCTTATGCATGAAATGAGACATTTGATAAAGAAGCCGAACAAGGATGTATGCGTCTTTCTTGCACCAACCGTTGCTTTAGTTCATCAGCAAGCGGAGGTTATATCCGACTCTACTGATTTTGAAGTTGGAACTTGCTGCGGGAGTAACAAGCGCTCCAAATCTCATCAACATTGGGAGGAGGAGATTGAACAATTTGAGGTTCTTGTTATGACCCCGCAAATATTACTCCACAATTTATCTCATTGTTTCATCAAGATGGAGATGATCGCACTTTTGATATTTGACGAATGCCATCATGCTCAAGCCAAAAGCAGCCATCCTTATGCAGAAATCATGAAGGTCTTCTATAAAAGTAATTCCACAAAAGTTCCCCGCATATTTGGTATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTACTGAAGCGAATCTACCAAAAAGCATCAACAGTCTTGAATTAATCCTTGATGCTAAGGTATACTCAGTTAAAGATGAGGCATTGAAAGCTTTTGTAACCACTCCTGAAGTTAATATATATCATTATAGTTCGACCACAAATATGGAAACTAGCTTGGAGTGGAAACTTGAGGAGTTTAAATGCCAGTGCACAGAAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGGATGAGCACAAAGAAACTTCTCAACCGCGTACATGATAATGTGGTCTTCTGTCTCAGGAGTCTTGGCTTTTGGGGAGCTTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCGTTCTGAGAGGCATGCATTAGTTGAGGCAGAAGGAATTTCAAGCGACGAGTCTGTATGTGATAAATATCTTGCTAAGACAGCTGAACTATTTCATTCCAAATGTAAGACAAGCGGCAGTGTTTCTGATCCATCTTCCTGGGAAATATTAAAAGAGCCTTTTTTCTCAGCAAAGCTATTACGTCTCATTGGGATACTGACCACTTTCAGGTTGCAACAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGAGCCCTGTCATTCATACTACGGCAGCTTGAGCTTCTAAGACACTGGAAGAGTGATTTTCTTGTAGGAGTTCATTCTGGAGTGAAGATTATGTCACGGAAGGCCATTAATACGATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCCACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGTTGCCTTGTCATACGTTTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCGTTCAGAATATGCATTTTTAGTTGACAGTGGCAATGAGAAGGAATTAGACATAATTGCTGGTTTTGAGAAAGATGAATTTCGAATGAATACGGAAATTACTGTCCGAACATCCAGTGAGACACACAACATCCCTGTGGAAAAAATATTCAAAGTTGAATCATCTGGTGCCTCAGTCAGTGCTGCATATAGTATCCAATTGCTTCACCAGTATTGTTCAAAGCTTCCACGTGATGAGTTCTTTGATCCCCGGCCAAATTTCTTTTACTTTGATGATTTAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTTCGATACACCAAATTGTCAGTACGCCGCAGTTGTCTACGGAAGCTGCAAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTGCTTTGAATGATTGTCTCTTGCCAGGGCAAAATGATACAAAGACAGAGAAGGTTTTGGGCTCTTCTGATTCCGATGAGTGTGAAGATGACCATTCAAGAGGGGAGTTACATGAGATGCGAGTTCCTTCTGTCTTTAGACAGTCATGGAAAAATGAGCAGAAAACTGTCCGTCTCAACTCTTACTACATTAAATTTTGCCCTACTCCAGAGGATAGGGTCTATAAAAAGTTTGGTTTATTCATCATGACTCCTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCACAGTAGATCTGTGATGACAAAGTTTATGCCATTTGGAGTTGTAGAATTCAACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTTAGAGTTATCCTTGATAGATTAGAGTTTGTTTCTAAGTTTGTAGAATTGGGCGCTGAATCTCGCACAAACACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATACGACGATGTGATGAAAGAATACGACGATGTGATGAAAGTAGATTGGGAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGTAGATACTTTAGATAAAAAGGTTACCCCTTTGAATAATCATCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGCTTAGTGTATGTTCCACATACAAAGTTCTTCTATTGTGTCACAGATATTATCTATGAAAAGAATGGATTCAGTCCTTATAAAGATTCAAACACTTCAAGCTACGTGGACCACTTCAATGAAAAGTATTCCATTAATCTCAAGCGCCCCGGACAACCACTTCTGCATGCAAAACAACTTTTTAATTTGCACAACCTGCTACACGATCGAAAGAATGAGGATGCTGACGAACCTCATGAGCTACAGGAATACTTAATTTATTTGCCTCCTGAGCTATGCGAACTGAAAATAGTAGGCTTTTCAAAGGATATTGGTAGTTCCATCTCTTTGCTACCTTCAATCATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCAGCTATCTTCCTCCTTCCCAGAGGCAACTAAAATTAGTGCCCATAGATTTCTAGAAGCTCTCACCACCGAGAAGTGTCAGGAACGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGCGACGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGATCTTACCAGCAAGCGATCCAATGTTGTAAATAATTCCAATTTGCTTAAGTTAGCTATTAGGCGCAATTTGCAGGTCTTTATACGTGATCAGGCATTTGATCCATTACGGTTCTATGCATTAGGCCGTCCTTGCCCTACAGTTTGTACCAAGGAAAATGAAGACAACATACACTTATGTTTAACTTCTGCTGAGGACAAAAGTAGTGCAAGTGCAACTGATATCCGATGTAATAAAAATCACCATTGGTTGTATAGGAAAACAATTGCTGATGTTGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGGTTTAAAGCTGCAGTTTCCTTTCTTGCATGGATTGGCATAGAAGTAAATTTTGAAGCCTCACAACTTGTTAATATTTGCACCGCGAGTGTTGGCTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAGGCAAGTTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTATAATAAGCACGGAGGAGGATGTTATCAGAGATTGGAGTTCCTTGGGGATGCTGTTTTAGATTTTCTAATTACGTCGTATCTATATTCAGCATACCCCAGTCTAAAGCCCGGCCAACTGACAGATCTGAGGGCATTGTCTGTCAATAATAAGGCATTCGCCTGTGTGGCCGTGGAACGCTGTTTTGATCAATATCTTCTGTGTGATTCAAAAGAACTGAGCAAGGCAGTCAAAAGGTATGTGGATTACATCAGAAGATCTGTATCAGACAGTGGCAATGACGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCGGGATTTGATTTGAACGAAGTTTGGAAGATCATGACCTCATTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGCCCTGTTAGAGATTTGCAAGAACTGTGCCAATTTAATAATTTGGAATTGCAGCTTCTGGAATCAAAACAAGGTAAAAAGTTCTCAGTTGAAGTCAAAGTGAATGGGGACAGTGTCTGTGAAAAAGTTTGTATCACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCCTCACAGCTACTTTTTTCAAAGTTGAAGGCTCAAGGCTTGAAATTGAAGTCAAAAACTTTGGAAGATGTTTTGAAAACAACAGTTAAGGCGGAACCAAAACTGATTGGCTATGATGAAACCCCCATTGATGTAACGGATACGACCACCATTGGACAGGAAATGGTCAATGGAGATCTATGCGACAATTCTAATCCAGAAATCTTCCGTATCCGGGAGGTATCCGATGCACAGTCCTCGTGTGTGAAACCTGTCGCCCAACGGCTTCAATCTTCTCCTAAGGAAAAGCTTGGTGAAACCAGTCGAAATCGTGATTGTGGCAGTGACTCATCAAAGACAGGAAATGCAAGATCGCGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGCCCACCTTAAGTTATTCACTTGCAAGGCAACGATGGAGATAGAAGAGGCGTCGGGTATGGTTTTCGAGTTTATTGGGGAACCTCTACCGAAGAAGAAAGACGCAGCAGATAGTGCAGCTTCGGCTGCATTTTGGTACCTGCAACAGGAAGGTTACCTGCATAAATGCTAG 4899 0.4113 MPDGESSTAVTDQFSDQGNSLSLSTVKNHDDSVIKDPTKIARKYQLALCKKAMEENIIVYLGTGCGKTHIAVLLMHEMRHLIKKPNKDVCVFLAPTVALVHQQAEVISDSTDFEVGTCCGSNKRSKSHQHWEEEIEQFEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQAKSSHPYAEIMKVFYKSNSTKVPRIFGMTASPVVGKGASTEANLPKSINSLELILDAKVYSVKDEALKAFVTTPEVNIYHYSSTTNMETSLEWKLEEFKCQCTETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLRSLGFWGALQASRILLSGDRSERHALVEAEGISSDESVCDKYLAKTAELFHSKCKTSGSVSDPSSWEILKEPFFSAKLLRLIGILTTFRLQQNMKCIIFVNRIVTARALSFILRQLELLRHWKSDFLVGVHSGVKIMSRKAINTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELDIIAGFEKDEFRMNTEITVRTSSETHNIPVEKIFKVESSGASVSAAYSIQLLHQYCSKLPRDEFFDPRPNFFYFDDLGGTVCQITLPSNASIHQIVSTPQLSTEAAKRDACLKAIEELYKLGALNDCLLPGQNDTKTEKVLGSSDSDECEDDHSRGELHEMRVPSVFRQSWKNEQKTVRLNSYYIKFCPTPEDRVYKKFGLFIMTPLPMEAEKLELDLHLAHSRSVMTKFMPFGVVEFNKDEIKMAENFQEMFLRVILDRLEFVSKFVELGAESRTNTSTFYLLLPVILKEYDDVMKEYDDVMKVDWETVKRCLCSPIFRHPVDTLDKKVTPLNNHLQLANGYRSVRDVENSLVYVPHTKFFYCVTDIIYEKNGFSPYKDSNTSSYVDHFNEKYSINLKRPGQPLLHAKQLFNLHNLLHDRKNEDADEPHELQEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHQLSSSFPEATKISAHRFLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSNVVNNSNLLKLAIRRNLQVFIRDQAFDPLRFYALGRPCPTVCTKENEDNIHLCLTSAEDKSSASATDIRCNKNHHWLYRKTIADVVEALVGAFIVDSGFKAAVSFLAWIGIEVNFEASQLVNICTASVGYFPLSAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPSLKPGQLTDLRALSVNNKAFACVAVERCFDQYLLCDSKELSKAVKRYVDYIRRSVSDSGNDGGPKSPKALGDLVESCVGAILLDSGFDLNEVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLLESKQGKKFSVEVKVNGDSVCEKVCITSQNKKEASRIASQLLFSKLKAQGLKLKSKTLEDVLKTTVKAEPKLIGYDETPIDVTDTTTIGQEMVNGDLCDNSNPEIFRIREVSDAQSSCVKPVAQRLQSSPKEKLGETSRNRDCGSDSSKTGNARSRLYELCAAYCWKPPSFECCKEEGPAHLKLFTCKATMEIEEASGMVFEFIGEPLPKKKDAADSAASAAFWYLQQEGYLHKC 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04481 1632 Gene3D Dicer dimerisation domain 564 661 IPR038248 -
Trre16g04481 1632 Gene3D - 1556 1625 - -
Trre16g04481 1632 Gene3D paz domain 862 967 - -
Trre16g04481 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1549 1625 IPR014720 -
Trre16g04481 1632 FunFam Endoribonuclease dicer-like protein 36 275 - -
Trre16g04481 1632 Pfam Helicase conserved C-terminal domain 391 503 IPR001650 -
Trre16g04481 1632 Pfam Ribonuclease III domain 1034 1167 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 Pfam Ribonuclease III domain 1243 1352 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 Pfam Dicer dimerisation domain 569 653 - -
Trre16g04481 1632 SMART DRBM_3 1550 1624 IPR014720 -
Trre16g04481 1632 SMART DRBM_3 1380 1444 IPR014720 -
Trre16g04481 1632 Gene3D - 1377 1452 - -
Trre16g04481 1632 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1549 1623 - -
Trre16g04481 1632 Gene3D Ribonuclease III domain 1000 1178 IPR036389 GO:0004525|GO:0006396
Trre16g04481 1632 SMART PAZ_2_a_3 846 995 IPR003100 GO:0005515
Trre16g04481 1632 SUPERFAMILY RNase III domain-like 1015 1182 IPR036389 GO:0004525|GO:0006396
Trre16g04481 1632 SUPERFAMILY dsRNA-binding domain-like 1334 1444 - -
Trre16g04481 1632 Gene3D - 41 294 IPR027417 -
Trre16g04481 1632 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g04481 1632 CDD RIBOc 1018 1177 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 ProSitePatterns Ribonuclease III family signature. 1243 1251 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 Gene3D Ribonuclease III domain 1205 1376 IPR036389 GO:0004525|GO:0006396
Trre16g04481 1632 Gene3D - 378 539 IPR027417 -
Trre16g04481 1632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 540 IPR001650 -
Trre16g04481 1632 SUPERFAMILY PAZ domain 864 967 IPR036085 GO:0005515
Trre16g04481 1632 Pfam PAZ domain 868 990 IPR003100 GO:0005515
Trre16g04481 1632 SUPERFAMILY dsRNA-binding domain-like 1548 1629 - -
Trre16g04481 1632 SMART riboneu5 1016 1187 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 SMART riboneu5 1223 1375 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 FunFam Endoribonuclease dicer-like 1 564 660 - -
Trre16g04481 1632 FunFam Endoribonuclease dicer-like 1 1202 1373 - -
Trre16g04481 1632 Pfam DEAD/DEAH box helicase 44 204 IPR011545 GO:0003676|GO:0005524
Trre16g04481 1632 MobiDBLite consensus disorder prediction 1519 1548 - -
Trre16g04481 1632 FunFam Endoribonuclease dicer-like 1 376 539 - -
Trre16g04481 1632 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1379 1445 IPR014720 -
Trre16g04481 1632 CDD RIBOc 1224 1374 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 SMART helicmild6 415 505 IPR001650 -
Trre16g04481 1632 SMART ultradead3 37 253 IPR014001 -
Trre16g04481 1632 ProSiteProfiles PAZ domain profile. 868 969 IPR003100 GO:0005515
Trre16g04481 1632 ProSiteProfiles Ribonuclease III family domain profile. 996 1167 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 520 IPR027417 -
Trre16g04481 1632 SUPERFAMILY RNase III domain-like 1207 1371 IPR036389 GO:0004525|GO:0006396
Trre16g04481 1632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 224 IPR014001 -
Trre16g04481 1632 CDD DEXHc_dicer 39 238 - -
Trre16g04481 1632 ProSiteProfiles Ribonuclease III family domain profile. 1208 1352 IPR000999 GO:0004525|GO:0006396
Trre16g04481 1632 PANTHER DICER-RELATED 54 1449 - -
Trre16g04481 1632 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 569 659 IPR005034 GO:0016891
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04481 Trre-Chr16 49538979 49551253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04481 445 535 Eukaryotic Initiation Factors Gene Family AT3G19760 35.417 9.18e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04481 K11592 - gmx:100797277 2470.27