Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04470 ATGGCTTTGCAACCATTGAGAAATCGTGCCACTTTGTCGACGTTCAATTTGTTTTCCAATGCTCTTTGCCGTTACTCTTCTGCTGAGGTTGCGAATGGCATTCCTGATGAGGCACGTGAGAGAATGATGTATTCTGACATAAACTCACAGATTGGCAGTTGCATGCCTCTCTCTTCAATGCGAATTGGAACAATCATTCACAACATTGAGCTGAACCCAGGGCAAGGTGGAAAGCTGGTCCGAGCGGCCGGAACCAATGCAAAGATCTTGAAAGAGCCGACATCACAGTACTGTTTAATTCAACACCCCTCTGGGGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTACTGTTTCTAATCCAACTCACGGCGATCGTAAGCTTAGGAAGGCTGGCCATAGCAGATGGCTCGGTCGGAGGCCGGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGTGGGTGGGGGAAAGGATCCCGCACTCCTTGGGGTAAGCCAACTAAGACTTTGTTTGGGAGTTTTGAGAGGAAGGAAAGGAAAGGTTAA 594 0.4848 MALQPLRNRATLSTFNLFSNALCRYSSAEVANGIPDEARERMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSQYCLIQHPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGGWGKGSRTPWGKPTKTLFGSFERKERKG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04470 197 Gene3D Ribosomal protein L2, domain 3 123 196 IPR014726 -
Trre16g04470 197 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre16g04470 197 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre16g04470 197 PANTHER RIBOSOMAL PROTEIN L2 44 189 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre16g04470 197 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
Trre16g04470 197 MobiDBLite consensus disorder prediction 151 197 - -
Trre16g04470 197 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Trre16g04470 197 Gene3D - 45 122 IPR014722 -
Trre16g04470 197 FunFam 50S ribosomal protein L2 122 196 - -
Trre16g04470 197 FunFam 60S ribosomal protein L2, mitochondrial 45 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04470 Trre-Chr16 49440720 49441929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04470 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 4.06e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04470 - - gmx:100792418 285.419