Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04469 ATGCTGCTTTGTTTTGGCTATGTAGCTGAGGTTGCGAATGGCATTCCTGATGAGGCACGTGAGAGAATGATGTATTCTGACATAAACTCACAGATTGGCAGTTGCATGCCTCTCTCTTCAATGCGAATTGGAACAATCATTCACAACATTGAGCTGAACCCAGGGCAAGGTGGAAAGCTGGTCCGAGCGGCCGGAACCAATGCAAAGATCTTGAAAGAGCCGACATCACAGTACTGTTTAATTCAACACCCCTCTGGGGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTACTGTTTCTAATCCAACTCACGGCGATCGTAAGCTTAGGAAGGCTGGCCATAGCAGATGGCTCGGTCGGAGGCCGGTTGTTCGGGGTGTGGCTATGAATCCTGTTGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGTGGGTGGGGGAAAGGATCCCGCACTCCTTGGGAGTTAAATGTCTTTGAAATATTTGCATCTTCCTTTGTGAGCTGGACATGCATTCAGCTTATACAACTCAGATGCATTGTTCACTTTGAGTTGCAAACAAGTTTCTCAATCTCGCCGCCGCCGCCGTGCCTGACTCTCTCATCATCTAATTGCAGGATACAATGGCCGCAACTGGTATGGATAAAGATCAGGCAGATATTTGGAATGGCTGAAAAAGAGATGGAGTATAGGGTTGAATTGTTCAACAAGATGACACAGTCGTGCTTCAATAAGTGTGTTGACAATAAGTACAAGGAGTCTGAGCTAAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCCAAATACTGGCATGTGACTAATCTGATTGGTCAGCTGCTTGGTTCTGGGAGGCTTCCAATGTGA 888 0.4651 MLLCFGYVAEVANGIPDEARERMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSQYCLIQHPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGGWGKGSRTPWELNVFEIFASSFVSWTCIQLIQLRCIVHFELQTSFSISPPPPCLTLSSSNCRIQWPQLVWIKIRQIFGMAEKEMEYRVELFNKMTQSCFNKCVDNKYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRLPM 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04469 295 FunFam Mitochondrial import inner membrane translocase 221 290 - -
Trre16g04469 295 ProSitePatterns Ribosomal protein L2 signature. 125 136 IPR022671 GO:0003735|GO:0005840|GO:0006412
Trre16g04469 295 SUPERFAMILY Tim10-like 233 289 IPR035427 -
Trre16g04469 295 PANTHER RIBOSOMAL PROTEIN L2 26 170 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trre16g04469 295 FunFam 60S ribosomal protein L2, mitochondrial 26 102 - -
Trre16g04469 295 Gene3D Ribosomal protein L2, domain 3 104 168 IPR014726 -
Trre16g04469 295 SMART Ribosomal_L2_C_2 30 163 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre16g04469 295 Pfam Ribosomal Proteins L2, C-terminal domain 32 148 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trre16g04469 295 Gene3D - 26 103 IPR014722 -
Trre16g04469 295 MobiDBLite consensus disorder prediction 132 154 - -
Trre16g04469 295 Pfam Tim10/DDP family zinc finger 228 287 IPR004217 -
Trre16g04469 295 Gene3D Mitochondrial import inner membrane translocase subunit tim13 like domains 222 290 IPR035427 -
Trre16g04469 295 SUPERFAMILY Translation proteins SH3-like domain 32 150 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04469 Trre-Chr16 49435659 49441256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04469 29 142 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 3.76e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04469 - - gmx:100527286 256.529