Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04467 ATGGCGTTTCACGAGCATCTACAGCACGAAATAGCATACCAGAGATTCACAGAAGAAGAAGATGAAGAAAGAGTACCATGGATTAACAACAACAACAACAACAGTGTAAACGCGCGTCAACAAAATTTCATGCACTTAGAACCGGAGAGAAGTGAGAAAAGCATGGATCGGAACCGGAGTGAGAACAATTGTACTGAAACGGAAGAGTTAAGGGAATACAAAGCGGAGATATTAGGACATCCACTTTACGATCAATTATTATCGGCACATGTTTCGTGTTTACGAATTGCTACACCGGTGGATCAGCTTCCGAGAATCGATGCTCAGCTTCAACAATCACAGCGTGTTCTTCAAAAATATTCTTCTGTTGGTATTGGAAATATGGATCCCAAGGAACTTGATCACTTTATGACACATTATGTTCTTTTGCTGTGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCAATGGAGGCAGTGATGGCTTGTTGGGATCTAGAGCAGTCTCTGCAAAGTTTGACAGGTGTATCTTCAGGTGAAGGAACTGGAGCAACAATGTCAGACGATGAAGAGGAGCAGGCAGAGAGTAATGCCAAGTTGTACGAAGGAGGTGGCTTTGATGGCGGCGTTGATACCCTTGGCTTTGGTCCTCTTGTCCCCACCGAGACCGAAAGGTCTTTGATGGAGCGAGTTAGGCTTGAGCTAAAGCATGAGCTCAAACAAGGTTACAAGTCGAAGATTGTAGATGTTAGAGAAGAAATTCTAAGAAAGAGAAGAGCAGGGAAACTCCCTGGGGACACCACCTCCCTTTTGAAGGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAAAGGAATTGGCATGCTAACTCCCCATCCTCTAGTAACTCCAAAACCAAACGCAAGAGCAGTGCAGGTGGTGAAACCAGTAACCAGAGCTTCATGTGA 1041 0.4438 MAFHEHLQHEIAYQRFTEEEDEERVPWINNNNNNSVNARQQNFMHLEPERSEKSMDRNRSENNCTETEELREYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLQKYSSVGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQAESNAKLYEGGGFDGGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKSKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSNSKTKRKSSAGGETSNQSFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04467 346 SMART ELK_2 237 258 IPR005539 GO:0003677
Trre16g04467 346 SMART HOX_1 259 324 IPR001356 GO:0003677
Trre16g04467 346 MobiDBLite consensus disorder prediction 178 199 - -
Trre16g04467 346 SUPERFAMILY Homeodomain-like 259 324 IPR009057 -
Trre16g04467 346 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677
Trre16g04467 346 FunFam homeobox protein knotted-1-like 3 isoform X1 258 319 - -
Trre16g04467 346 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Trre16g04467 346 Pfam KNOX2 domain 130 177 IPR005541 GO:0003677|GO:0005634
Trre16g04467 346 CDD homeodomain 260 319 IPR001356 GO:0003677
Trre16g04467 346 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677
Trre16g04467 346 Pfam KNOX1 domain 73 114 IPR005540 GO:0003677|GO:0005634
Trre16g04467 346 SMART KNOX2_2 122 178 IPR005541 GO:0003677|GO:0005634
Trre16g04467 346 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 331 - -
Trre16g04467 346 SMART KNOX1_2 71 115 IPR005540 GO:0003677|GO:0005634
Trre16g04467 346 MobiDBLite consensus disorder prediction 316 346 - -
Trre16g04467 346 Gene3D - 263 340 - -
Trre16g04467 346 Pfam ELK domain 237 258 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04467 Trre-Chr16 49412973 49418217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04467 73 337 Homeobox Transcription Factor Family AT5G11060 81.041 3.87e-160 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre16g04467 KNOX2 4.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04467 - - gmx:100803673 545.814