Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04464 ATGGCGTTTGATCAAAATTCTGTTCCAAAGGATCTGCGCGTATTGAATGTGGCACCAATAATGGTGGAGGAGACTCTCATTTCACCGGCAAGCGTCACCTCGCCTCCGACTCCTGATTCAGCTTCTGATTATTTCTATCCTGCTTCGGCCTCCGCGTCAGCGACCTGGTGCGTCCGCCCTATTGTGAGTCCTCCTTCTATTGGATTAAACTATGGTTCCGGTTTTGGTAACCGTGTTGTGGCTGGAAATGCATTGAATTTGGGAAATTGGGTAGGGACTAGTACTAGTAGTAATAATAATAATAATAATAGCAATAATGCTTTGCATTGTAATGATGGTGTTAATGTGAATGTAAGTGGTTTTTCTTATGGTGGTCATGGTGGAAATAGAGCGGTTGATGATGCCGGGGATGATTCGAATTCGGGTAGGAAAGTTAAATTTTTGTGTAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGTGTGTTGAGATATGTTGGAGGGCAGACAAGGATAATTAGTGTTAGGAGAGATGTGAGTTTTAATGATTTGGTCCAAAAAATGGTAGATACTTATGGACAACCTGTGGTTATTAAATATCAGTTACCGGAGGAGGATCTTGATGCGTTGGTTTCCATTGCTTGTCCTGATGATGTTGAGAATATGATGGAGGAGTATGGAAAATTGGTTGAGAGATCTCCTGATGGTTCTGCTAAATTGAGGGTTTTTTTGTTTCCTATGTCAGAGGTTGATATTTCTAGTGCAGCGCAGGTTGGAGATTTGCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGTATCGTAGATGTGAATGGGGTTTCTGTTGGGTTCAAGAGGAAAGAGAGTGTTACAAGTGCAGCTTCAACACAAAATTCTGATTTGAGTGGGATAGAGACTATTGATAGCTCTCTTGCCGGTCAAGGGGATTCATCGCCCTGCATGTTATCGCCTAGAGAGTATGTAGCTACTTCTCCAGACACAAGTGCACATTTTCTGGTTTCTGAGTCCAGTACACCGGTATACTCAGGTGCTTCTCCTGTTTCATTTGGCACGCCTGTGACAAAGACCGGTCTAACATACCCTTCCTATATGCAGAATGAGATTGAGTTAGAAAAGCCTGTTCCTGTTACTTTGTCCCAGCAACCATTTGAATTGCATCAATCAAGAATGGAAATTCCACCTTCACCTTATTTGAATCACGGAGAGTATGTTCATCTGCCTCCCCAGACAGGGTTCCCAAATCCTCACCTTTTCGGAAAGATGGGGCCTGTTTTCGCCCAACAACAGTTTCATAGTAATGCTTCTGGATTAGCTTACCATCAGGCTATCCCCGGAGCACAAATGACAATGACTCAACCTTCTTCTCGTCTTGGTATAAGACCAAATCTCATCCAGCCACAACCATTGATACAAACACAACATAATCATCTGAACCAATATAGTGATGAAAATACATCAGGAATAAGGATTGTCCAGCTTCCTTCCGAACACAGCTACAATACATATCAGGTTCCAGTAAATCAAGTTCCCGTGAATCAAGTTCCATCTGTCATAGTTGGGGGTAATTGTGGTTGGGTTCAGGTTCCTCCACAACAACACGAGCATGGGTTATCACCTCAACAACAAGTAATTAACTCAGAGCAAATCCTTAGAGCCGAGGGATGTTCTATGTGTCAGAAAAAGCTGCCTCACGCCCATTCAGATCCAGTGGTTCAGGATCAACATGATGGCAGTTCAAGTCCAGTTCCTGATTCACGCCCAAGTTACAATAGTTTTCCGTTGGAGGACACTGTAAAAGCTCAAGCAACAAAGAGGGTTGAGCCTATGGTGGCATCGCCCTTAAAGGAAGGCATTGTTGAACAAGGGTATAGCACAAGGCCAAGTGTCATTAGCAAATTGAAAGCTCATAATGGAGCAAGACCTTGTACTGATAATACTGTGATTACTCATAATTTTGAGCCTCAGAATGAAGGTGGGATGATTTTTATACAAAATCCAAAAGAATTTGACCATCCCATGAATTCTTGTATCCAAGAAACAATTGGCAGGATAGGTGAAAAACGTTCTTCTGGAGATGGACTTGGGGCCACAGGAACACCACCATCATCTTATCCAGATGATGTTGTCCGCCAGCATACGACGCCGGTTGAAATCTGGGTTAAACAAGATGATCCTGTGAATAAACATGTCAATAATGATATACCTAGAGTTGATGGAACGCCTATACATACTTCAGAGTGCTCCTCTCAAGGATCTGCCAAAGAATACACTAATGAGCTTGCTGGTGTCATTTCAAAATCAGATGCAGTAGATAATTGGATTAGACAGGGATATCTAAGACCTGTTGATGGAAGGAATGACACACTCAAGATTAACATGGCAGAAGGTTATGTAGGTGATGATCAATGCTTGCTTCCAGTTGATAAATCATTAGATTACAACAGCCAGATTGCTGCAGAGGAAGAGGTGATTCTGGATAACAACTTTGGCACATCAAAATTGATAGTTGACGCAAATAAAATTAAGATGATAGCATTGCAGCCATGTTCTTCTAAGGAAATTTCATTCAGGCACAATTCCAGGATAGGGGAATACAATGATGCTGTACAATCACCTGTGTTGGACGTTACTCAATCAAAGATTTTAAACCATCACAAGGATGATTCAACATCATCTACATCATCACCATCTTTCTTGTTTGGGGATATGCAGGATTCTCCAAACTCAGTTTTCGGCAATCAGGATCCTTGGAATATACACCATGGAACCTACAAGAAATCAAATTTGGATGCACAATTTGATGGTGATCTCTACGAGTCATTCAAACATAATGGTTGGTGTGACAAAGGTTCAACCGAAGATCAACAACTTAAAGTTGTTGCTGAAGACGTAGCAGCTTCTGTTCTGCACCCATGTGCTCCTTCAAATCCTAACTTGCAATCTGAAGACATTTCCTGTCACAAAAACATTGAGGATGGTAATGTTCAAAATAATCTAATACATGCGAAGTGTAGAGATATAACTCAGGATGTCAAGAGTAACCTACCAGAGAAGGGAAATTTTGGCTTTCCGACATCGGGTGTTGGACGTTTGCAGATTATAAAGAACTGTGACCTTGAAGAGCTGACAGAATTGGGTTCTGGTACCTTTGGGACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCAATTAAGCGAATAACTGATAGATGTTTTGCTGGAAAGCCTTCGGAACAAGAGCGCATGAGAGACGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCTAATGTGGTTGCTTTCTATGGTGTTGTGCTTGATGGCCCCGGAGATTCTGTGGCAACAGTAACCGAGTACATGACTAATGGTTCTCTCAGAAATGCCTTGCAAAAGAATGAGAGGAATCTAGACAAGCGCAGACGTCTTATGATTGCAATGGATGTGGCCTTTGGAATGGAATACCTGCATGGAAAAAATATAGTACACTTTGACTTGAAAAGCGACAACTTGCTTGTGAATCTCCGAGATCCACACCGCCCAATATGCAAGGTTGGTGACTTGGGTCTATCCAAAGTAAAATGTCAGACACTGATCTCCGGAGGTGTGAGAGGAACTCTACCGTGGATGGCTCCAGAGCTACTGAATGGAAGCAGTAGCCTTGTTTCAGAGAAGGTTGATGTGTTTTCATTCGGTATTGTGATGTGGGAACTCTTAACTGGCAATGAGCCATACGCTGATTTGCACTATGGTGCTATCATAGGTGGTATTGTGAGCAACACTTTGCGCCCTTCAATTCCCGAATCATGTGATCCGGAATGGTGTTTGTTGATGGAGAGATGTTGGGCCTCAGAACCATCAGAGAGACCCAACTTCACTGACATTGCTGATGAATTGCGTTCTATGGCAACCAAACGTCAAAATCAACAGCTACAACCCTCTCATTTGCACACACAAGTCAACAAATGA 4005 0.425 MAFDQNSVPKDLRVLNVAPIMVEETLISPASVTSPPTPDSASDYFYPASASASATWCVRPIVSPPSIGLNYGSGFGNRVVAGNALNLGNWVGTSTSSNNNNNNSNNALHCNDGVNVNVSGFSYGGHGGNRAVDDAGDDSNSGRKVKFLCSFGGKILPRPSDGVLRYVGGQTRIISVRRDVSFNDLVQKMVDTYGQPVVIKYQLPEEDLDALVSIACPDDVENMMEEYGKLVERSPDGSAKLRVFLFPMSEVDISSAAQVGDLQDTGQKYFDAVNGIVDVNGVSVGFKRKESVTSAASTQNSDLSGIETIDSSLAGQGDSSPCMLSPREYVATSPDTSAHFLVSESSTPVYSGASPVSFGTPVTKTGLTYPSYMQNEIELEKPVPVTLSQQPFELHQSRMEIPPSPYLNHGEYVHLPPQTGFPNPHLFGKMGPVFAQQQFHSNASGLAYHQAIPGAQMTMTQPSSRLGIRPNLIQPQPLIQTQHNHLNQYSDENTSGIRIVQLPSEHSYNTYQVPVNQVPVNQVPSVIVGGNCGWVQVPPQQHEHGLSPQQQVINSEQILRAEGCSMCQKKLPHAHSDPVVQDQHDGSSSPVPDSRPSYNSFPLEDTVKAQATKRVEPMVASPLKEGIVEQGYSTRPSVISKLKAHNGARPCTDNTVITHNFEPQNEGGMIFIQNPKEFDHPMNSCIQETIGRIGEKRSSGDGLGATGTPPSSYPDDVVRQHTTPVEIWVKQDDPVNKHVNNDIPRVDGTPIHTSECSSQGSAKEYTNELAGVISKSDAVDNWIRQGYLRPVDGRNDTLKINMAEGYVGDDQCLLPVDKSLDYNSQIAAEEEVILDNNFGTSKLIVDANKIKMIALQPCSSKEISFRHNSRIGEYNDAVQSPVLDVTQSKILNHHKDDSTSSTSSPSFLFGDMQDSPNSVFGNQDPWNIHHGTYKKSNLDAQFDGDLYESFKHNGWCDKGSTEDQQLKVVAEDVAASVLHPCAPSNPNLQSEDISCHKNIEDGNVQNNLIHAKCRDITQDVKSNLPEKGNFGFPTSGVGRLQIIKNCDLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGDSVATVTEYMTNGSLRNALQKNERNLDKRRRLMIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGNEPYADLHYGAIIGGIVSNTLRPSIPESCDPEWCLLMERCWASEPSERPNFTDIADELRSMATKRQNQQLQPSHLHTQVNK 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04464 1334 ProSiteProfiles Protein kinase domain profile. 1048 1315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04464 1334 Pfam Protein tyrosine and serine/threonine kinase 1051 1311 IPR001245 GO:0004672|GO:0006468
Trre16g04464 1334 SUPERFAMILY Protein kinase-like (PK-like) 1041 1309 IPR011009 -
Trre16g04464 1334 Gene3D Transferase(Phosphotransferase) domain 1 1136 1334 - -
Trre16g04464 1334 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1041 1135 - -
Trre16g04464 1334 ProSitePatterns Protein kinases ATP-binding region signature. 1054 1085 IPR017441 GO:0005524
Trre16g04464 1334 PANTHER SERINE-THREONINE PROTEIN KINASE 211 1313 - -
Trre16g04464 1334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1173 1185 IPR008271 GO:0004672|GO:0006468
Trre16g04464 1334 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1136 1327 - -
Trre16g04464 1334 Gene3D Phosphorylase Kinase; domain 1 1042 1135 - -
Trre16g04464 1334 MobiDBLite consensus disorder prediction 581 600 - -
Trre16g04464 1334 Gene3D - 165 247 - -
Trre16g04464 1334 CDD STKc_MAP3K-like 1054 1311 - -
Trre16g04464 1334 CDD PB1_UP2 148 246 - -
Trre16g04464 1334 Pfam PB1 domain 164 247 IPR000270 GO:0005515
Trre16g04464 1334 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 164 248 - -
Trre16g04464 1334 PRINTS Tyrosine kinase catalytic domain signature 1282 1304 IPR001245 GO:0004672|GO:0006468
Trre16g04464 1334 PRINTS Tyrosine kinase catalytic domain signature 1167 1185 IPR001245 GO:0004672|GO:0006468
Trre16g04464 1334 PRINTS Tyrosine kinase catalytic domain signature 1238 1260 IPR001245 GO:0004672|GO:0006468
Trre16g04464 1334 PRINTS Tyrosine kinase catalytic domain signature 1130 1143 IPR001245 GO:0004672|GO:0006468
Trre16g04464 1334 SMART PB1_new 159 248 IPR000270 GO:0005515
Trre16g04464 1334 MobiDBLite consensus disorder prediction 740 759 - -
Trre16g04464 1334 SMART serkin_6 1048 1314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04464 1334 MobiDBLite consensus disorder prediction 574 600 - -
Trre16g04464 1334 MobiDBLite consensus disorder prediction 695 716 - -
Trre16g04464 1334 SUPERFAMILY CAD & PB1 domains 160 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04464 Trre-Chr16 49400439 49408410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04464 68 614 MAP Kinase Kinase Kinase AT3G46920 36.568 2.25e-77 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre16g04464 PK_Tyr_Ser-Thr 1.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04464 - - mtr:11439273 2209.11