Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04459 ATGGGTTCCAGTTCTAGTAGACTTGGGTCTCGCCCTTCTTCTACTCCAAGGGTCAACAACAACAACAACCATCGCTTCAGATTCTCTTCCTTTCTATGCGGCGCTTCCACCTCTCGCTCCATTTCTCAGATGGAAGAACATCCATATGAAGAACTTCAGGTTAATTCGGCTAGAGATTTTGATGATGAAATTCATAAAGTCGCTGAAGAATCGTCATTATCATGTACAGAAGAAGCTAGAGTTGGTTGCTGTCCTCAAGCTGAAACTTCAACCTCAATTGATATGAGAACCCAATTCTGCGGGAATGATACTGTTGAAGGTTCTTCTGGAAACGTTGCAACAAGTAGTCAGAGGAATTGCTTGTTTGAACATAAGGAGCTAGTCCCTCCTTATCGGGTAAGTGCTGGTCATAGTCATCCTGAATCATATAGTGATAGTAACAACACAGCTAGTACTTCATTTGTTGAACAGCAGTCTTCAGACCCAGTTTCTTTAAATGTTTCTGCTAACAAGGATAGAATCAATAATGTTGATGATCCAGTTGTTAGTGGTGTCTCTCGAATCTCTCGCGAGACGGAGCGTCCAAGGAGCTCAATCTCTCAAGAGCATGGAAATCCCAGTTCTGGTGAAATTTCTGTTGAGAATGACACGGATGCAGACACATCTGTCCAGAGTTCTTCGATTCCTGTTTCTCAAGCTTCTAATACACCACCAATTTCTCAAGCTACAGAAGATGAACGCCGTCATGAGACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAATAGTGCAGGGAAATGATGGTATGTTTCAAGTAGATGTGGTGGCAATATCTTCCAACATTTTATCTAGCAGCAATGCAGATGCCGATGATCATGATGCCAGAAGAAGTGGTAGAAGATTATTTTGGGATGCTTTTTCACAACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACTATTGTTTTCTCCACTGGAGGCGCTGATGATTCGGGATCTCAAGATCGGTGGCATGTTGATTTTGATGAGGATTTGTCAAATGATGGGGTTAGAGGTGCGTCTGGATATCGGGGCAGTATTCACAGATTGAATGAAAGAGTGCGAAACTCAAGATCTGAGATATGGGAAAGGCTTCGTGGAGGCCTTGATGAGATTGGTCGGTTGAACACTTCATGTCCATTAGGACTCCATGCAGATGGTATGTGCTCGTGCGAGTCATTCCCAATGGCTGAAGAATCTAGCACTCGATCAAGTATTTCAAGAATAGTTATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCTGTTTCCCTATCTACAGTCTCACTCCCTGCACCTGAATCAATTGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGAAGCTGATGGAGGCAATGGTGATGAACAATGTTATATATGCCTGGCGGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCATGAATATCACATGTCGTGTGTCGATAAGTGGCTGAAGGAAATACATGGTGTATGCCCTCTGTGTCGCGGCAATGTTTGTGGAGGGTTAACTGAGTCGTCAACCGACTCAGAAGTGCAGTCTCGGTGA 1632 0.4381 MGSSSSRLGSRPSSTPRVNNNNNHRFRFSSFLCGASTSRSISQMEEHPYEELQVNSARDFDDEIHKVAEESSLSCTEEARVGCCPQAETSTSIDMRTQFCGNDTVEGSSGNVATSSQRNCLFEHKELVPPYRVSAGHSHPESYSDSNNTASTSFVEQQSSDPVSLNVSANKDRINNVDDPVVSGVSRISRETERPRSSISQEHGNPSSGEISVENDTDADTSVQSSSIPVSQASNTPPISQATEDERRHETIPSGLGILVSNREIVQGNDGMFQVDVVAISSNILSSSNADADDHDARRSGRRLFWDAFSQRSSRRLGDSPTIVFSTGGADDSGSQDRWHVDFDEDLSNDGVRGASGYRGSIHRLNERVRNSRSEIWERLRGGLDEIGRLNTSCPLGLHADGMCSCESFPMAEESSTRSSISRIVMLAEALFEVLDEIHRQPGSVSLSTVSLPAPESIVDSFPLKSHKKVDEADGGNGDEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGNVCGGLTESSTDSEVQSR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04459 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 528 IPR013083 -
Trre16g04459 543 MobiDBLite consensus disorder prediction 139 173 - -
Trre16g04459 543 Pfam Ring finger domain 481 524 IPR001841 -
Trre16g04459 543 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g04459 543 FunFam Putative RING zinc finger domain superfamily protein 449 529 - -
Trre16g04459 543 SMART ring_2 482 523 IPR001841 -
Trre16g04459 543 ProSiteProfiles Zinc finger RING-type profile. 482 524 IPR001841 -
Trre16g04459 543 MobiDBLite consensus disorder prediction 132 251 - -
Trre16g04459 543 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 542 - -
Trre16g04459 543 SUPERFAMILY RING/U-box 477 527 - -
Trre16g04459 543 MobiDBLite consensus disorder prediction 199 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04459 Trre-Chr16 49373659 49377296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04459 393 528 C3H Transcription Factor Family AT5G45290 51.634 7.33e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04459 - - cam:101493889 771.926