Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04456 ATGTGTGTACAAGAGGGTGAACAAGTTGATCAAGATAACAATATGGAAGAACTTGATAACAGAATAATTTCATGGCCTTTGCATTGTGATCTCTTACATTCCCAGATGGATAATACAGAAAAAGACTCTTCTTTTAGAATTACTGCTGTTAATTCATTTCCTCTGGAAAGCATTTGTGAGAATACAGAGATTTCAGAGAAAAAACAGAATCTGATAAATTATGTCCCTACACTTCGGTCGGGGGAGTGGTCTGATATCGGAGGTCGGCCTTATATGGAGGATACTCACATATGCATTGGAGATTTGGCAAAGAAATTTGGTTATAATGTAATCAGCGACGAAGCGATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTTCGCGATCATCTGCCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTTGAACTTGAGAAGGTGGTAACAAGGTCATTTTTGGAGATTGATTCAGAGTTTGCAAAAACATGCTCTATTGACTCTTCCCTATCTTCTGGTACAACTGCATTGACTGCAATTATATTTGGAAGGTCTTTACTTGTGGCCAATGCTGGGGACTGCCGCGCTGTTTTGTCCCGAGGTGGAGCAGCTATAGAAATGTCCAAAGATCACAGGCCATTATGCATGAAAGAAAGGATGAGGATTGAGTCACTTGGCGGATTTGTTGACGATGGTTACTTGAATGGACAGTTAGGCGTCACGCGCGCACTAGGCAACTGGCATCTCGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCATTGAGTGCTGAACCAGAACTTAAATTGACGACATTGACAAAAGATGACGAGTTTTTGATAATTGGAAGTGATGGAATATGGGATGTTTTCCGTAGCCAAAATGCCGTAGATTTTGCTAGGAGGAGGCTTCAACAGCATAATGATGTGAAACAATGTTGCAAGGAAATAATAGGAGAAGCAATAAAAAGAGGAGCAACAGATAATTTAACTGTTGTGATGGTATGCTTTCAATCAGATCCACCAACAACACCTTTGGTTGTTGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATGTCTGTTAGAAGGATGA 1137 0.4116 MCVQEGEQVDQDNNMEELDNRIISWPLHCDLLHSQMDNTEKDSSFRITAVNSFPLESICENTEISEKKQNLINYVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVISDEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLEIDSEFAKTCSIDSSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGAAIEMSKDHRPLCMKERMRIESLGGFVDDGYLNGQLGVTRALGNWHLEGMKEMSGRGGPLSAEPELKLTTLTKDDEFLIIGSDGIWDVFRSQNAVDFARRRLQQHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFQSDPPTTPLVVERPRVRRSISAEGLQNLKCLLEG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04456 378 PANTHER PROTEIN PHOSPHATASE 2C 66 342 IPR015655 GO:0004722|GO:0006470
Trre16g04456 378 ProSiteProfiles PPM-type phosphatase domain profile. 79 344 IPR001932 -
Trre16g04456 378 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Trre16g04456 378 FunFam Probable protein phosphatase 2C 22 61 347 - -
Trre16g04456 378 SUPERFAMILY PP2C-like 70 345 IPR036457 -
Trre16g04456 378 CDD PP2Cc 79 344 IPR001932 -
Trre16g04456 378 Pfam Protein phosphatase 2C 91 336 IPR001932 -
Trre16g04456 378 Gene3D - 59 348 IPR036457 -
Trre16g04456 378 SMART PP2C_4 69 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04456 Trre-Chr16 49354674 49357058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04456 68 378 PP2C-type Phosphatase Gene Family AT2G25620 59.683 4.80e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trre16g04456 PP2C 3.3e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04456 K14803 - gmx:100782648 642.114