Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04452 ATGTCACTTCTTCTGTATAACGCTTCAACACCCACTCTCTTCCATTCTCAATCCCTAATCTCCCAAACCGATTCTACTTCAAGTGTATTGTGTGGCCTGTGGAGAATGGGAAGTAACAGTGTTGAAAAGATCCCTATCAATAACAGCACTGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAAACACTGGATTCACAAACTTATACCCTCAAAGTGGATAAACAGATGCCAGTGCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGACGATCAACTATTGTCTGCCTACCATGTTGAAGATGGTCACACACTCCATCTGGTTGTGAGGCATCCTGATCTGCCACCACCAGGAAGTCTGCCCAATCATTCAGCGACTGAGCCAAACTCAAGCACAAGCCATGGTCACAGTACTCAAGTCGCTCCAGGTGTTTTCATTGAAACTTTCAATGTTCCTGTTCAGGGTGATGGAGTTCCACCTGAAATAAATAGGATTGTTTCTGCTGTTCTAGGCTCTATCGCCGGGCTTCCAAATTCTGCAAGTGGCGGTGAAGGGATTGTTGTCAGGGATAACGATTCCCAAGGCCTTGGAAGAACTTCAGATTCTAGTGGAATATCAGATCCGCTACGTCCAATACTTGATCAAACTGGTTTAAGGAGTTTGTCAGATAGATTACGGAATACTTTTGGAGTACCAGCATCAAGTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACATTGTCCCAGTACCTAAGTCATATGAGCCATGAATTTGATACAATTGTTAGAGAAGTCAGAGAAGGGGGGAATAATGCCCAACCCGCTGAGGCTCATAGTAATGAAGAAATGGGATCCGCTTCTTCACGTTTGGGTTCAACACTGGCAAATCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGATCATTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAATCAGATGTAACTGATGCCTCGTCGCGATCAAGCTTTCAATCTAGGGCTATGAGGACTGGAACATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGTACAACCATGACATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTCAATGGTGGACCTGCAGTTTTTGTATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAAGTTTAGGTAGTGGACTTGGCTCAAGTTTTTTCCCAAGACGTATCGATATACAGATAAGACGAGGCACTTCAACAACCACACCCAATGCCAATCAAGAAGACCGTGGGGATTCACAATCTGCTTCAGTACAAAGAAATCCAGCTGAAAGTTCTGCTAGTCAAGCAACGTCTAGGCGACCAGATGCATCTATTGCCGCAGAGCCAGCAATAAGGATAGTGCCAATTAGAACTATGGTTGCAGCAGTACCTGGTCCCTTGGGTCGTCCTTCTTCAGAACCATCTGGTAATTCTACAGGGCTTTACCATCCAGTTCTTGGGAGATTTCAACGTGTAACTACAGGGCAGGCAAATAGTGAACAAGGATCTCAATCTGCAAGTCAGCACCGTGCACCACATTCAACTCCTGAATCCACATTGGAAAGGCAAATCGCGGAAGAGTCTGCAAGGAATGGTACCTCATCAACTCCAAACACGAGACAAGAGCCATCTAATTCCCGTGTTGTAAATATCAATATTCTGGCAGCTGGTGGGCCCCAAAACAACCAAGAGTCTGATAGACAGATACCAGGCAGTGTACTTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGAAATTCACGTGGAGGATTCAAGCTTACAAGGAGCAAATGTGGGTTCCACCCCAGTGCATGCTGCAACATCAAGGAGTTCTCCCCAAGTCCCTGATGCTGAACCTCCTGTTAGTGATGAAGGATTATTTTTGTCTAATGTACTCCGTGAGATCATGCCGGTTATATCTCAACGTGTAGGGTCTGAGAGAAATCCTTCTGAAGATCAAACAGCTCAAGATTCGTCAAACCAGGTTGAAACTAATGCTGGGACATCACGCAGACGCAGTGGTTCTGAACCAAGCCCTCCAGATGCAAAACGCCAAAAGATGGAATGA 2265 0.4521 MSLLLYNASTPTLFHSQSLISQTDSTSSVLCGLWRMGSNSVEKIPINNSTGSSETTIEIKIKTLDSQTYTLKVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRHPDLPPPGSLPNHSATEPNSSTSHGHSTQVAPGVFIETFNVPVQGDGVPPEINRIVSAVLGSIAGLPNSASGGEGIVVRDNDSQGLGRTSDSSGISDPLRPILDQTGLRSLSDRLRNTFGVPASSSLGSLQPPVIPDSLTTLSQYLSHMSHEFDTIVREVREGGNNAQPAEAHSNEEMGSASSRLGSTLANLSSPASLAEVLLSTRRMIIEQAGECILQLARQLENQSDVTDASSRSSFQSRAMRTGTLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFVSPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSSLGSGLGSSFFPRRIDIQIRRGTSTTTPNANQEDRGDSQSASVQRNPAESSASQATSRRPDASIAAEPAIRIVPIRTMVAAVPGPLGRPSSEPSGNSTGLYHPVLGRFQRVTTGQANSEQGSQSASQHRAPHSTPESTLERQIAEESARNGTSSTPNTRQEPSNSRVVNINILAAGGPQNNQESDRQIPGSVLQFLRTLFPGGEIHVEDSSLQGANVGSTPVHAATSRSSPQVPDAEPPVSDEGLFLSNVLREIMPVISQRVGSERNPSEDQTAQDSSNQVETNAGTSRRRSGSEPSPPDAKRQKME 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04452 754 MobiDBLite consensus disorder prediction 660 681 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 467 507 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 660 689 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 467 512 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 293 314 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 296 314 - -
Trre16g04452 754 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 46 750 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 706 754 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 129 156 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 560 612 - -
Trre16g04452 754 FunFam Large proline-rich protein BAG6 49 142 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 208 229 - -
Trre16g04452 754 PRINTS Ubiquitin signature 88 108 IPR019956 -
Trre16g04452 754 PRINTS Ubiquitin signature 67 87 IPR019956 -
Trre16g04452 754 PRINTS Ubiquitin signature 109 130 IPR019956 -
Trre16g04452 754 ProSiteProfiles Ubiquitin domain profile. 57 132 IPR000626 GO:0005515
Trre16g04452 754 Pfam Ubiquitin family 59 128 IPR000626 GO:0005515
Trre16g04452 754 Gene3D - 50 147 - -
Trre16g04452 754 MobiDBLite consensus disorder prediction 709 741 - -
Trre16g04452 754 SMART ubq_7 57 128 IPR000626 GO:0005515
Trre16g04452 754 SUPERFAMILY Ubiquitin-like 47 147 IPR029071 -
Trre16g04452 754 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04452 Trre-Chr16 49314306 49325721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04452 57 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.58e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04452 K23390 - gmx:100783070 1045.03