Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04450 ATGCCATTTCAAGAAATTCTTGCTTCCACTAAAGAGGATCGTTATCTTGATGTGATTGGTCATGTTGTTGAAAAAACTGCTATGAAAGAAACTCAGAAGAATGGAAAGATTAACAAGGTCATGGATGCTACTCTTGAGGATTTGGAAGGGAATAGGGTGCATTGCACCTTATGGGACGAGTATGCTTTCAAAATGCAGCAATTCTTGGACACTCATGACCCAGCACTACCTGTTGTAATCATATTCCAACTTTGCAAGCTAAAAAAATATCTTGGTTTTATGGGAATTTCAAACTCCTTCCATGGTTCAAAACTTTTTCTGAATTTTGGGCTTCCTGAAGCCACTGATTATATAGAAAGGATGAATGCCTCCAATGTTGAGCTAACTCAAGGTGTAAGTCAAATGACTGGTCCGACTGTGATTAGTACTGCTGATGATTTGCTTCAAACTCCTAGAATGACCATTGAAGATCTTATAGAAGCGAATGAGAAGTGCCATGGTTCTGTCTTAGCATGGACATGTGAATTTGCCACAGATGCGGGTTGGTTTTACCATGCCTGCACTAAATGTTCATCAAGGATTAGCTTTATGGGTGGTCAACTCTATTGTGACAAGTGCAGGCTACCAAGGACTGCAATACCTAAGTATAAAGTCCATTTGGAGGTCATCGACAATACTGGCTCCATAACTTTTATACTCTTTGATCGTGTTGTTACCCAAGTAGTTGGGAGGACTGCACAAGATCTGCTTGACTCTATCAATGATGCTGATCACAGGGTTAAACCATTCCCTTCTCAATTAGATGTGTTTGTCAACAAGCGCATCCTTTTCAAGGTGGAAGTGACTGATGCAAATTTATACCGTAATTGGCGTGGTTATACTGTAAAGAAGTTATCTGATGACGAAGAAATTATCAACCGTTTCACTGAGCTTCATGGGATAAATCTGAGTGGTGACAATGAGTATGCTCTTGATGTTGGTGGTTCTGATTCCCATGGTGCTGCTGATGATGTTTCATTGGATGTAATCGAGGGAGTGGATTCAAGTGTTAATGAAGGCATTGTGGCTGTTGATGGCACTCACACTCCCAGCAGCAAGGTTGTTCGGGAGAAAGATGCTGGCTTTAGTAATGTTGGGGGGTCTACCACCAAGAAGCTGTTTGTATCAATTGAGGATACTGACTTGGCTGGCACGGTTGATGCTCCAACTACCAGATCAGCTGGGAAAAGATCTGCTAATCCTCATGAAGTTGAGGTGGCTGCCCCAAAAGAAGTTAAAATGGCTTGTGTGAAGAATACAAATGTCAACTGA 1311 0.415 MPFQEILASTKEDRYLDVIGHVVEKTAMKETQKNGKINKVMDATLEDLEGNRVHCTLWDEYAFKMQQFLDTHDPALPVVIIFQLCKLKKYLGFMGISNSFHGSKLFLNFGLPEATDYIERMNASNVELTQGVSQMTGPTVISTADDLLQTPRMTIEDLIEANEKCHGSVLAWTCEFATDAGWFYHACTKCSSRISFMGGQLYCDKCRLPRTAIPKYKVHLEVIDNTGSITFILFDRVVTQVVGRTAQDLLDSINDADHRVKPFPSQLDVFVNKRILFKVEVTDANLYRNWRGYTVKKLSDDEEIINRFTELHGINLSGDNEYALDVGGSDSHGAADDVSLDVIEGVDSSVNEGIVAVDGTHTPSSKVVREKDAGFSNVGGSTTKKLFVSIEDTDLAGTVDAPTTRSAGKRSANPHEVEVAAPKEVKMACVKNTNVN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04450 436 PANTHER OS03G0429900 PROTEIN 30 289 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g04450 436 Pfam Replication factor-A C terminal domain 178 283 IPR013955 -
Trre16g04450 436 Gene3D - 1 130 IPR012340 -
Trre16g04450 436 CDD RPA1_DBD_B_like 17 121 - -
Trre16g04450 436 CDD RPA1_DBD_C 181 301 IPR047192 -
Trre16g04450 436 SUPERFAMILY Nucleic acid-binding proteins 150 298 IPR012340 -
Trre16g04450 436 SUPERFAMILY Nucleic acid-binding proteins 2 124 IPR012340 -
Trre16g04450 436 Gene3D - 142 309 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04450 Trre-Chr16 49303639 49305829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04450 1 282 Core DNA Replication Machinery Family AT5G08020 23.891 1.54e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04450 - - tpra:123896123 502.286