Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04449 ATGAGAGGCACTAAGGTTTTTACAGTTAATGCCCCTGAGATACCAATGAACCATTTTGAGTTCATGCCATTTCAAGAAATTCTTGCTTCCACTAAAGAGGATCGTTATCTTGATGTGATTGGTCATGTTGTTGAAAAAACTGCTATGAAAGAAACTCAGAAGAATGGAAAGATTAACAAGGTCATGGATGCTACTCTTGAGGATTTGGAAGGGAATAGGGTGCATTGCACCTTATGGGACGAGTATGCTTTCAAAATGCAGCAATTCTTGGACACTCATGACCCAGCACTACCTGTTGTAATCATATTCCAACTTTGCAAGCTAAAAAAATATCTTGGTTTTATGGGAATTTCAAACTCCTTCCATGGTTCAAAACTTTTTCTGAATTTTGGGCTTCCTGAAGCCACTGATTATATAGAAAGGATGAATGCCTCCAATGTTGAGCTAACTCAAGGTGTAAGTCAAATGACTGGTCCGACTGTGATTAGTACTGCTGATGATTTGCTTCAAACTCCTAGAATGACCATTGAAGATCTTATAGAAGCGAATGAGAAGTGCCATGGTTCTGTCTTAGCATGGACATGTGAATTTGCCACAGATGCGGGTTGGTTTTACCATGCCTGCACTAAATGTTCATCAAGGATTAGCTTTATGGGTGGTCAACTCTATTGTGACAAGTGCAGGCTACCAAGGACTGCAATACCTAAGTATAAAGTCCATTTGGAGGTCATCGACAATACTGGCTCCATAACTTTTATACTCTTTGATCGTGTTGTTACCCAAGTAGTTGGGAGGACTGCACAAGATCTGCTTGACTCTATCAATGATGCTGATCACAGGGTTAAACCATTCCCTTCTCAATTAGATGTGTTTGTCAACAAGCGCATCCTTTTCAAGGTGGAAGTGACTGATGCAAATTTATACCGTAATTGGCGTGGTTATACTGTAAAGAAGTTATCTGATGACGAAGAAATTATCAACCGTTTCACTGAGCTTCATGGGATAAATCTGAGTGGTGACAATGAGTATGCTCTTGATGTTGGTGGTTCTGATTCCCATGGTGCTGCTGATGATGTTTCATTGGATGTAATCGAGGGAGTGGATTCAAGTGTTAATGAAGGCATTGTGGCTGTTGATGGCACTCACACTCCCAGCAGCAAGGTTGTTCGGGAGAAAGATGCTGGCTTTAGTAATGTTGGGGGGTCTACCACCAAGAAGCTGTTTGTATCAATTGAGGATACTGACTTGGCTGGCACGGTTGATGCTCCAACTACCAGATCAGCTGGGAAAAGATCTGCTAATCCTCATGAAGTTGAGGTGGCTGCCCCAAAAGAAGTTAAAATGGCTTGTGTGAAGAATACAAATGTCAACTGA 1374 0.4141 MRGTKVFTVNAPEIPMNHFEFMPFQEILASTKEDRYLDVIGHVVEKTAMKETQKNGKINKVMDATLEDLEGNRVHCTLWDEYAFKMQQFLDTHDPALPVVIIFQLCKLKKYLGFMGISNSFHGSKLFLNFGLPEATDYIERMNASNVELTQGVSQMTGPTVISTADDLLQTPRMTIEDLIEANEKCHGSVLAWTCEFATDAGWFYHACTKCSSRISFMGGQLYCDKCRLPRTAIPKYKVHLEVIDNTGSITFILFDRVVTQVVGRTAQDLLDSINDADHRVKPFPSQLDVFVNKRILFKVEVTDANLYRNWRGYTVKKLSDDEEIINRFTELHGINLSGDNEYALDVGGSDSHGAADDVSLDVIEGVDSSVNEGIVAVDGTHTPSSKVVREKDAGFSNVGGSTTKKLFVSIEDTDLAGTVDAPTTRSAGKRSANPHEVEVAAPKEVKMACVKNTNVN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04449 457 Gene3D - 13 151 IPR012340 -
Trre16g04449 457 CDD RPA1_DBD_C 202 322 IPR047192 -
Trre16g04449 457 CDD RPA1_DBD_B_like 38 142 - -
Trre16g04449 457 Gene3D - 163 330 IPR012340 -
Trre16g04449 457 SUPERFAMILY Nucleic acid-binding proteins 171 319 IPR012340 -
Trre16g04449 457 SUPERFAMILY Nucleic acid-binding proteins 18 145 IPR012340 -
Trre16g04449 457 Pfam Replication factor-A C terminal domain 199 304 IPR013955 -
Trre16g04449 457 PANTHER OS03G0429900 PROTEIN 49 310 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04449 Trre-Chr16 49303639 49305892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04449 15 303 Core DNA Replication Machinery Family AT5G08020 24.333 5.71e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04449 - - tpra:123896123 530.406