Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04431 ATGGATGTGGATGATAAAAGCCAACAGCAGAAAGCAATTACTCAATTTGATAGGCTTCAGGAGCTTCTTTCGAATGAAGGCTGCCCTCCCGCTGAGAAAGTTATTGATTCATTTATTCAATCTCGTGCTGTTCCTCGTTTACTTAAATTTCTAGCTATGGATGATTTCCCTCGAGTTCAGTTTAAGGCTGCTTGGTTACTCGCATACATAGCATCTGGTACTTCTAACCACATTAAGGTGGTAATTGATCATGGGACAGTGCCAATATTTGTCAACCTACTTAGTTCACCTAGTCATCATGTTCGGGAACAGGCTGCGTGGGCATTGGGAAACATTGCCAGTGATTCCCCTAGCTGCCGTGATCTTGTTCTCAGTCATGGTGCCATGATCCCACTGTTATCCCAGTTGAATGACCAATCAAACATTTCTACGCTTAGAGATGCCATGTGGACCCTTTTAAACTTTCTCAGGGGCAAGCCACAACCCCAATTTGAGCAGGTGAGGCCAGCCCTTCCCGCTCTCCAGCGTTTGCTTTTTTCCGATGATGAACAAGTCCTGACAGATACGTGCTGGGCACTCTCATCTCTTTCTTATGGATCAAATGACAAAATCCAAGCCGTGATTGACGCAGGTTTATGTGGCAGACTGGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGTTGATTCCTGCGCTTCTCACGGTGGGAAATATTGTAAGTGGAGACGATATGCAGACTCAGGTTGTTATCAAACATGGTTTACTCCCATGCCTTTTGAGCCTGTTGACCCATAATCACGACAAAAGTATTCAGATAGAGGCTTGCTGGACCATAGCAAACATTACATCCGGAAACACTGAGCACATACAGGCTGTTATTGAAGCTGGTCTGATTGCTTCCCTAGTCAATCTCTTTCAAAATGCCGAGTTTCACATTCAAAAAGAAGCTGCATGGGCATTCTATAATGCTTCATCCGGCGGTACCAATGAGCAAATTAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTACTCGTTTGCCCTGATCCAAAAATTGTTACTATCTGTTTAGAAGGTCTTGAGAATTTTCTGAAGGTTGGAGAAGCGGAGAAAGGTTTTGTTAACACGGGAGATGATGTCAACTTGTATGCTCAGATGATAGATGATGCCGAGGGATTGAAAAAGATTGAAAAATTGCAGAGTCATGACAACAATGAAGTTTATGAGAATGCTGTTAAAATTCTCAAGACATATTATTTGGTGGAAGACGACGAGGAGATGCTACCTCTAGGCAATGACCGACGAAGAGAAGACGCGACCTCTAGGCTATGA 1341 0.44 MDVDDKSQQQKAITQFDRLQELLSNEGCPPAEKVIDSFIQSRAVPRLLKFLAMDDFPRVQFKAAWLLAYIASGTSNHIKVVIDHGTVPIFVNLLSSPSHHVREQAAWALGNIASDSPSCRDLVLSHGAMIPLLSQLNDQSNISTLRDAMWTLLNFLRGKPQPQFEQVRPALPALQRLLFSDDEQVLTDTCWALSSLSYGSNDKIQAVIDAGLCGRLVQLLLHPSPSVLIPALLTVGNIVSGDDMQTQVVIKHGLLPCLLSLLTHNHDKSIQIEACWTIANITSGNTEHIQAVIEAGLIASLVNLFQNAEFHIQKEAAWAFYNASSGGTNEQIKYLVSQGCIKPLCDLLVCPDPKIVTICLEGLENFLKVGEAEKGFVNTGDDVNLYAQMIDDAEGLKKIEKLQSHDNNEVYENAVKILKTYYLVEDDEEMLPLGNDRRREDATSRL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04431 446 PIRSF Importin_alpha 1 444 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 243 283 IPR000225 GO:0005515
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 285 324 IPR000225 GO:0005515
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 75 114 IPR000225 GO:0005515
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 200 239 IPR000225 GO:0005515
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 170 197 IPR000225 GO:0005515
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 36 72 IPR000225 GO:0005515
Trre16g04431 446 Pfam Armadillo/beta-catenin-like repeat 328 365 IPR000225 GO:0005515
Trre16g04431 446 Gene3D - 1 423 IPR011989 -
Trre16g04431 446 FunFam Importin subunit alpha 1 423 - -
Trre16g04431 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 211 IPR000225 GO:0005515
Trre16g04431 446 PANTHER IMPORTIN ALPHA 4 427 - -
Trre16g04431 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 85 127 IPR000225 GO:0005515
Trre16g04431 446 SUPERFAMILY ARM repeat 29 421 IPR016024 -
Trre16g04431 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 296 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 74 114 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 159 198 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 242 283 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 285 325 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 200 240 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 116 157 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 328 368 IPR000225 GO:0005515
Trre16g04431 446 SMART arm_5 30 72 IPR000225 GO:0005515
Trre16g04431 446 Pfam Atypical Arm repeat 384 430 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04431 Trre-Chr16 49132389 49134800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04431 57 317 U-box Gene Family AT3G46510 23.372 1.43e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04431 K15042 - gmx:100808498 632.869