Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04403 ATGCCTCAACCAACATCAGTGGCTTTGTGGTATGCACAACAACAACTACAAGATTTTGCTCATGATAATATGGACAATGAAAGCATGAAAATTGCTCTCATTTTCAATATGGATGCTGGTTTTTGTGATGTTGCTGTTAATGCTGCTACAACAAATGGAAAATGGCGAATAAAAGCCTTGACAGGAAGTACTATTGGTGGAGAAGACTTGCTTGGAAATATGATGCGACATCTATTACCTGATTCTGAAAATATATTCAAGAAACATGTTCACGAGGACGGAGAAGTAAAATTGATGGCTCTTTTTCGATGTGAAATCCAGAAAGCGATTACTCGGCTTTCGTCTCAGACACGCGTTGAGGTTGATTTAGATTTGGGATATGGTTTGGAAGATATGCAAGGCTGTAACGCAGGAAGAGTTTGA 423 0.3901 MPQPTSVALWYAQQQLQDFAHDNMDNESMKIALIFNMDAGFCDVAVNAATTNGKWRIKALTGSTIGGEDLLGNMMRHLLPDSENIFKKHVHEDGEVKLMALFRCEIQKAITRLSSQTRVEVDLDLGYGLEDMQGCNAGRV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04403 140 Gene3D Actin; Chain A, domain 4 67 125 - -
Trre16g04403 140 Gene3D - 25 66 - -
Trre16g04403 140 Gene3D - 2 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04403 Trre-Chr16 48934327 48934749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04403 3 122 Calmodulin-binding Proteins AT1G56410 28.099 3.30e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04403 K09489 - gmx:100809773 142.895