LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04399	ATGGCTTTTCCTCTTATTTCAAGAAATCCTACTTTCCACACATTTCCATCCCACACTCACCAATTCACCGCATCCTCTTCCTTCAGAACTAAATCTCTCTCCCTCCTCAATTTCGCAAAGATGGAAGGAAGTGAAATCACTGAACAAGTTGCAGGGAAAGTAGTGGAAGATGATGATTTGATTTTGAAGAAGAAAGTTTTTGTTGCTGGTGCTACTGGTAGCACTGGGAAAAGAATCGTTCAACAGTTACTTGCAAAGGGTTTTGCTGTTAAGGCTGGTGTTAGAGATGTGGACAAGGCTAAGACCTCATTTTCCTCTACCAACCCTTCTCTTCAATTTGTTAAAGTTGATGTTACAGAGGGTTCTGATAAGCTAGCTGAAGCTATTGGCGATGATACAGAAGCAGTAGTATGTGCCACAGGCTTTCGGCCAGGGTGGGATTTGCTTGCTCCGTGGAAGGTTGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCAGGAAAGTCAACGTAAACAGATTCATTCTTATAAGCTCCATTTTAGTCAATGGAGCAGCTATGGGACAGCTACTCAATCCAGCTTACATCTTTCTCAACGTTTTCGGACTCACATTAGTAGCAAAGTTGCAGGCAGAAAATCATATCAGGAAATCTGGTATAAATTACACAATAATAAGACCTGGAGGGTTGAAAAACGATCCTCCTACCGGAAATATTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCAAGTTGCAGAGGTAGCTGTGGAATCATTGGCTTATCCCGAGTCATCTTATAAAGTTGTGGAGATAGTTGCTCGACCTGATGCTCCTAAGCGCGCATACCATGATCTTTTTGGTTCCATAGTTCAACGATGA	897	0.4225	MAFPLISRNPTFHTFPSHTHQFTASSSFRTKSLSLLNFAKMEGSEITEQVAGKVVEDDDLILKKKVFVAGATGSTGKRIVQQLLAKGFAVKAGVRDVDKAKTSFSSTNPSLQFVKVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDPPTGNIVMEPEDTLYEGSISRDQVAEVAVESLAYPESSYKVVEIVARPDAPKRAYHDLFGSIVQR	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04399	298	Pfam	NAD(P)H-binding	70	266	IPR016040	-
	Trre16g04399	298	Gene3D	-	51	287	-	-
	Trre16g04399	298	CDD	SDR_a5	65	280	-	-
	Trre16g04399	298	PANTHER	FLAVIN REDUCTASE-RELATED	50	296	-	-
	Trre16g04399	298	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	63	278	IPR036291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04399	Trre-Chr16	48909624	48912370	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g04399	61	195	Monolignol Biosynthesis Gene Families	AT2G33590	31.944	2.02e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04399	-		-	gmx:100792523	465.307