Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04390 ATGTCTAATAATCATCTATCCAATGGTGAATCAGAGCATCTTATTCGCCAACCCTTATTATCTTCTCAAAGATCCATTGTCAATTCCACTTCTCAAGTTGCAATTGTTGGTGCCAATGTCTGCCCAATTGAGAGTCTTGATTATGAGATTTTTGAGAATGAATTCTTTAAGCAGGATTGGAGAAGCAGAGGGGTTTATCAGATTTTTCAGTATATATGTATGAAATGGTTTTTGTGTTTAATGATTGGTATGATTGTTGGTTTTATTGGATTTTGTAACAATCTTGCTGTTGAAAATCTTGCTGGCATCAAATTTGTTATCACATCTAATATGATGTTGGAAAGAAGGTTCTTGTTTGCCTTTGTTATATTCTTTGCTTCAAATTTGAGTCTCACGCTTTTTGCATGTATAATAACGGCTTTTATAGCACCTGCTGCTGCCGGTTCAGGAATATCAGAGGTGAAGGCTTACCTAAATGGCGTCGATGCGCCTGGAATATTTACTGTACCGACTCTTTTTGTTAAGATTATTGGAAGCATTACGGCAGTATCATCATCTCTTGTTGTTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCAGCATTGTTGGGTCAAGGAGGTTCCAAAAGATTTGGAATAACATGGAGATGGTTACGATTTTTTAAGAATGACCGTGATCGAAGAGATCTAATAATATGTGGATCAGCAGCTGGAATTGCTGCCGCTTTTCGTGCCCCTGTTGGCGGCGTCTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAACTGCTCTTCTATGGAGAGCTTTCTTTACCACAGCAACAGTAGCAATTTTCCTTCGAGCCATGATTGATGTATGTCTAAGTGGAAAATGCGGCTTATTCGGTAAAGGGGGATTGATAATGTTTGATGCTTATTCAGCAAGCATTTCATACCATTTGGGAGATGTTCCTCCTGTGTTTATTCTTGCTGTTATAGGAGGGTTACTTGGAAGCTTATTTAATTTTATGACAAATAAAGTTCTTCGCATGTACAACGTTATCAATGAGAAAGGCACCGTTTACAAACTTTTGCTTGCTTGTTTAATCTCCATTTTTACATCATGTCTTCTTTTCGGATTGCCATTCTTTGCATCTTGCCGACTTTGTCCTCTTGATGCAGTTGAGCCTTGTCCAACAATAGGTCGATCTGGTATCTACAAGAAATTCCAATGCCCTCCTAATCACTATAACGGCCTCGCCAGCCTCATTTTTAACACGAACGACGATGCTATCAAAAACCTATTTAGCATGAACACCGACAATGAGTTCGAGTTTTCATCGATGTTGATTTTTTTCTTCATATGTCTCTTTTTAACTGTCTTTAGCTGCGGAATTGTTGCCCCTGCCGGTCTTTTTGTGCCAATTATCGTGACTGGTGCATCGTACGGACGCATGGTTGGAATATTGGTTGGAAAACGGTCCAATCTTAGCCACGGCCTTTATGCTGTACTAGGCGCTGCTTCTCTTCTCGGTGGATCTATGAGGACGACGGTTTCTCTGTGTGTAATTATCCTAGAATTGACCAATAACTTGTTACTGCTACCCCTAATAATGATGGTGCTTTTGGTGTCTAAAAGTGTAGCAAATGTTTTCAATTGTAATGTATATGACCTTATAATGAAAGCCAAAGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGGCGATGTAGTCACAGGTCCGCTTCAGATGTTTAACGGTATCGAGAAAGTTCGCAACATTGTTTTTGTCCTCAGAACAACAACACACAATGGATTTCCTATTATCGACGAGCCTCCACGTTCAGAAGCTCCGGTTTTATTCGGTATAATACTCCGCGACCACCTTATCACATTGTTAAAGAAGAAAGCTTTCTTGCCTGCACCTACGGCAATTAGTTATGATATATTAAGACAGTTTTCAGCCGATGATTTTGCAAAGAAGGGTTCAATCGAACGTGTAAAGATTGAGGATATACAGTTAACGGAGGAAGAGATGGGCATGTACATTGATCTACATCCTTTTACTAATGCTTCGCCTTACACTGTTGTGGAAACAATGTCACTAGCAAAGGCACTTATACTTTTTCGAGAAGTCGGTTTAAGACATTTGCTTGTGATACCCAAGATCCCCGGTAGATCGCCCGTGGTAGGTATATTGACGCGGCATGATTTCACGCCAGAACATATATTGGGCATGCATCCTTTTTTGGTAAGAAGCAGATGGAAAAGATTAAGATTTTGGCAAACTTTTCTTGAAAAAATTCTTTCAGGCCTTTGA 2331 0.4011 MSNNHLSNGESEHLIRQPLLSSQRSIVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGVYQIFQYICMKWFLCLMIGMIVGFIGFCNNLAVENLAGIKFVITSNMMLERRFLFAFVIFFASNLSLTLFACIITAFIAPAAAGSGISEVKAYLNGVDAPGIFTVPTLFVKIIGSITAVSSSLVVGKAGPMVHTGACVAALLGQGGSKRFGITWRWLRFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEEMASWWRTALLWRAFFTTATVAIFLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHLGDVPPVFILAVIGGLLGSLFNFMTNKVLRMYNVINEKGTVYKLLLACLISIFTSCLLFGLPFFASCRLCPLDAVEPCPTIGRSGIYKKFQCPPNHYNGLASLIFNTNDDAIKNLFSMNTDNEFEFSSMLIFFFICLFLTVFSCGIVAPAGLFVPIIVTGASYGRMVGILVGKRSNLSHGLYAVLGAASLLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVANVFNCNVYDLIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQMFNGIEKVRNIVFVLRTTTHNGFPIIDEPPRSEAPVLFGIILRDHLITLLKKKAFLPAPTAISYDILRQFSADDFAKKGSIERVKIEDIQLTEEEMGMYIDLHPFTNASPYTVVETMSLAKALILFREVGLRHLLVIPKIPGRSPVVGILTRHDFTPEHILGMHPFLVRSRWKRLRFWQTFLEKILSGL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04390 776 FunFam Chloride channel ClC3 67 385 - -
Trre16g04390 776 SUPERFAMILY CBS-domain pair 568 742 IPR046342 -
Trre16g04390 776 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 749 - -
Trre16g04390 776 Gene3D - 566 744 IPR046342 -
Trre16g04390 776 Gene3D Clc chloride channel 67 565 - -
Trre16g04390 776 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g04390 776 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g04390 776 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g04390 776 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g04390 776 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre16g04390 776 Pfam Voltage gated chloride channel 132 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre16g04390 776 ProSiteProfiles CBS domain profile. 692 753 IPR000644 -
Trre16g04390 776 CDD CBS_pair_voltage-gated_CLC_euk_bac 568 745 - -
Trre16g04390 776 Pfam CBS domain 696 742 IPR000644 -
Trre16g04390 776 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04390 Trre-Chr16 48842583 48846721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04390 6 763 Ion Channels AT5G33280 73.351 0.0 1126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04390 K05016 - gmx:100817901 1245.72