Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04389 ATGGATGTAACTGTTTTGTTCTTGGTGCTATTGTTGCAATTTTCAACAATTTTTGGGTCTGAAGTTTTGTTACAGACAAAGGATTGTGAAAATAATTTGGTAGCAAATTCATATTCTAGTCATGGTGAGGAGTTGTTCTACATAAATAGGAATGTTGTAAACAAAGTTGATTTCTGTAAAGCTCTTCAATTGTATATTGCAAATGGTTGTGATTTGAAGGACTACTTTGAAAGAAACAACTGTGTGTTGGATTTGGATGTTACTTTAGTGAATTTGCCTTCAAAGGGAGGAAGGAAACTTTTGCTAAAAGATTTAGACAATAATTCGACATCACAAGGAGATTCTAAGTCTGTGTCAAGCAACCAAGTTGGAATTTTTGCAGGTGGAGCTTTGTTGGTATGTTGTGCTGTTGTTTGTCCTTGTTTCTATGGGAAGAGAAGGAAGGCAACTTCTCATGCTGTTCTTGAGAAGGACCCAAATTCAATGGATTTAGCTTCCTCATTTGAACCATCTGTTTCTGATAAGATTCCGGCTAGTCCACTTCGGGTTCCACCTAGTCCATCAAGATTCTCAATGTCTCCAAAACTCAGTAGACTTCAGTCATTACATCTCAACCTGAGCCAGGTTTCAAAAGCTACTCGTAATTTTTCAGAAACATTACAAGTTGGAGAAGGAGGTTTTGGAACTGTTTACAAGGCTCGGTTAGATGATGGTCTGATCGTGGCTGTAAAACGTGCAAAAAGGGAACATTTTGAGAGTTTGAGAACAGAATTCAGCAGTGAAGTCGAACTTCTGGCCAAAATTGATCATCGAAACCTTGTGAAGCTACTTGGTTATATTGACAAAGGAAACGAACGTATCCTTATTACGGAGTTTGTGCCAAATGGTACTCTTCGAGAACATTTGGATGGTTTGCGTGGAAAAATTCTGGATTTCAATCAGCGCCTTGAAATCGCAATTGATGTTGCTCATGGCTTGACCTATCTGCATCTGTATGCAGAAAAACAAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTGACTGAAAGCATGCGGGCTAAAGTCGCTGATTTTGGATTTGCAAAGCTTGGTCCGGTAAACAATGACCATACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCATCTCACTCCTAAAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTCTGACTGGTCGTCGTCCTGTGGAGTTGAAAAAAACTGCTGAAGAACGAGTAACATTAAGATGGGCCTTCAGGAAATATAATGAAGGAAGTGTGGTGGAACTGCTTGATCCATTAATGCAAGAAGCTGTAAAAACAGATGTTGCTGTGAAGATGTTTGATTTGGCATTTAACTGTGCAGCACCAGTAAGAACAGATAGACCTGATATGAAAGCAGTTGGGGAGCAATTGTGGGCAATAAGAGCAGATTACCTCAAGAGTAGTGCAAGTACAACTGCATGA 1515 0.3881 MDVTVLFLVLLLQFSTIFGSEVLLQTKDCENNLVANSYSSHGEELFYINRNVVNKVDFCKALQLYIANGCDLKDYFERNNCVLDLDVTLVNLPSKGGRKLLLKDLDNNSTSQGDSKSVSSNQVGIFAGGALLVCCAVVCPCFYGKRRKATSHAVLEKDPNSMDLASSFEPSVSDKIPASPLRVPPSPSRFSMSPKLSRLQSLHLNLSQVSKATRNFSETLQVGEGGFGTVYKARLDDGLIVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERILITEFVPNGTLREHLDGLRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNNDHTHISTKVKGTVGYLDPEYMKTYHLTPKSDVYSFGILLLEILTGRRPVELKKTAEERVTLRWAFRKYNEGSVVELLDPLMQEAVKTDVAVKMFDLAFNCAAPVRTDRPDMKAVGEQLWAIRADYLKSSASTTA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04389 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Trre16g04389 504 SMART serkin_6 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04389 504 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 188 292 - -
Trre16g04389 504 Gene3D Phosphorylase Kinase; domain 1 187 292 - -
Trre16g04389 504 CDD STKc_IRAK 222 488 - -
Trre16g04389 504 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Trre16g04389 504 Gene3D Transferase(Phosphotransferase) domain 1 293 502 - -
Trre16g04389 504 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 293 502 - -
Trre16g04389 504 SUPERFAMILY Protein kinase-like (PK-like) 197 491 IPR011009 -
Trre16g04389 504 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 98 491 - -
Trre16g04389 504 ProSiteProfiles Protein kinase domain profile. 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04389 504 Pfam Protein tyrosine and serine/threonine kinase 221 488 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04389 Trre-Chr16 48835398 48838972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04389 201 491 Receptor kinase-like Gene Family AT5G59700 45.361 3.59e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trre16g04389 PK_Tyr_Ser-Thr 8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04389 - - aprc:113845864 826.624