Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04380 ATGATCATTTCCGAGAAAAATCGTAGAGAGATCTCCAAATACCTCTTCCAAGAGGGAGTTTGTTATGCAAAGAAGGATTACAATTTGGCAAAGCATCCAGATATTGATGTGCCAAATCTGCAAGTGATTAAGCTCATGCAGAGCTTCAAATCAAGGGAATATGTTAGGGAAACTTTTGCTTGGATGCATTATTACTGGTTCCTTACCAATGATGGAATTGAGTTTCTCAGAACTTACCTCAATCTTCCATCTGAGATTGTGCCAGCTACTTTGAAGAAGCAGGCTAAGCCAGCTGGTGCAAGGCCATTCGGCGGTGATCGCCCTAGGGGTCCACCTCGGGAGGGAGAAAGGAGATTCGGTGGTGACCGTGATGGATATCGTGGAGGTCCTAGACCTGGTGGTGAATTTGGTGGAGAAAAGGGTGGAGCTCCAGCCGACTATAGACCTTCTTTCGGGGGTCCTGGCGGAAGACCTGGCTTTGGACGTGGTTCTGGTGGCTTTGGAGCTCCAACTAGTTCCAATGATGCTTAA 531 0.4727 MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGARPFGGDRPRGPPREGERRFGGDRDGYRGGPRPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNDA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04380 176 FunFam 40S ribosomal protein S10 1 105 - -
Trre16g04380 176 PANTHER 40S RIBOSOMAL PROTEIN S10 1 169 IPR037447 -
Trre16g04380 176 MobiDBLite consensus disorder prediction 107 129 - -
Trre16g04380 176 Gene3D - 1 104 IPR036388 -
Trre16g04380 176 MobiDBLite consensus disorder prediction 93 176 - -
Trre16g04380 176 Pfam Plectin/S10 domain 3 94 IPR005326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04380 Trre-Chr16 48686182 48687702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04380 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 78.571 1.01e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04380 K02947 - gmx:100500445 215.312