Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04355 ATGGACAACAACAATAACAAGTGTGGATGTTGGTCTGTCCTTAAACGTGGTGTTTGTAAACCCTCAGCTTCTTCTAGACACTCTCCTAACACTATCCCTCGTACTAGTGTTGTTCATGATGCAGCAACTGAGACGCGATACCTGAATGCTAGCAATCGAGAACTGTGTCCTCCGAAGGAAGCTAGGCTCTCTTCTGATAATCCTGATCCCCCACCTCAGGAAAATAAGGCTCCTTGTCAGCTCCTTCAGTTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCAGGTTCAGGAATTACGGTAGCTGTCAAAAGCTTGAAACCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAACTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTACGAGTTTATGACTCGCGGAAGTCTAGAGAATCATCTTTTCAGAAGAACCGTACCTCTTCCATGGTCCAACAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGATTGGCCTTCCTCCATAACGGTCCAGAACCAGTCATTTACAGAGATTTCAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGTCCTCAAGGAGACAAAACACATGTTTCTACTAGAGTTGTTGGAACTTATGGTTATGCTGCCCCAGAATATGTCATGACAGGACACTTAACTGCTAAGAGTGATGTTTATAGTTTTGGAGTTGTGTTACTCGAGATTTTAACCGGAAGAAGATCGATGGACAAGAAGCGTCCAAGCGGGGAACAAAATCTTGTTTCATGGGCTAGACCGTATTTAGCTGACAAGCGAAAACTTTACCAACTTGTTGATCCTCGCTTGGAACTAAACTATTCTTTAAAAGCAGTGCAGAAAATTGCTCAGTTAGCTTATAGTTGCCTCAGTAGAGACCCTAAATGCCGTCCAAACATGGATGAAGTTGTGAACGCTCTGACACCATTGCAGGATCTTAACGACTTTGCTATCTTGTCTTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAGAAGAAACCAGATGGAACTCCGCATATCACTTATACACATTCCAAGAGCATGAGGGCTTTGCCTTTGAATACAGGAAAACACCTACGATGA 1290 0.4302 MDNNNNKCGCWSVLKRGVCKPSASSRHSPNTIPRTSVVHDAATETRYLNASNRELCPPKEARLSSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKIAQLAYSCLSRDPKCRPNMDEVVNALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRALPLNTGKHLR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04355 429 ProSiteProfiles Protein kinase domain profile. 96 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04355 429 ProSitePatterns Protein kinases ATP-binding region signature. 102 134 IPR017441 GO:0005524
Trre16g04355 429 Gene3D Phosphorylase Kinase; domain 1 72 181 - -
Trre16g04355 429 Pfam Protein tyrosine and serine/threonine kinase 100 375 IPR001245 GO:0004672|GO:0006468
Trre16g04355 429 Gene3D Transferase(Phosphotransferase) domain 1 182 392 - -
Trre16g04355 429 SUPERFAMILY Protein kinase-like (PK-like) 78 383 IPR011009 -
Trre16g04355 429 PANTHER OS01G0588500 PROTEIN-RELATED 64 379 - -
Trre16g04355 429 FunFam Probable serine/threonine-protein kinase PBL8 182 397 - -
Trre16g04355 429 MobiDBLite consensus disorder prediction 54 76 - -
Trre16g04355 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Trre16g04355 429 FunFam Serine/threonine-protein kinase BIK1 64 181 - -
Trre16g04355 429 CDD STKc_IRAK 102 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04355 Trre-Chr16 48458425 48461255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04355 84 390 Glycoside Hydrolase AT3G07070 54.662 7.96e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g04355 PK_Tyr_Ser-Thr 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04355 - - gmx:100785385 807.749