Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04354 ATGGAGATGGACAACAACAATAACAAGTGTGGATGTTGGTCTGTCCTTAAACGTGGTGTTTGTAAACCCTCAGCTTCTTCTAGACACTCTCCTAACACTATCCCTCGTACTAGTGTTGTTCATGATGCAGCAACTGAGACGCGATACCTGAATGCTAGCAATCGAGAACTGTGTCCTCCGAAGGAAGCTAGGCTCTCTTCTGATAATCCTGATCCCCCACCTCAGGAAAATAAGGCTCCTTGTCAGCTCCTTCAGTTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCAGGTTCAGGAATTACGGTAGCTGTCAAAAGCTTGAAACCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAACTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAACGGCTTCTTGTTTACGAGTTTATGACTCGCGGAAGTCTAGAGAATCATCTTTTCAGAAGAACCGTACCTCTTCCATGGTCCAACAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGATTGGCCTTCCTCCATAACGGTCCAGAACCAGTCATTTACAGAGATTTCAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGTCCTCAAGGAGACAAAACACATGTTTCTACTAGAGTTGTTGGAACTTATGGTTATGCTGCCCCAGAATATGTCATGACAGGACACTTAACTGCTAAGAGTGATGTTTATAGTTTTGGAGTTGTGTTACTCGAGATTTTAACCGGAAGAAGATCGATGGACAAGAAGCGTCCAAGCGGGGAACAAAATCTTGTTTCATGGGCTAGACCGTATTTAGCTGACAAGCGAAAACTTTACCAACTTGTTGATCCTCGCTTGGAACTAAACTATTCTTTAAAAGCAGTGCAGAAAATTGCTCAGTTAGCTTATAGTTGCCTCAGTAGAGACCCTAAATGCCGTCCAAACATGGATGAAGTTGTGAACGCTCTGACACCATTGCAGGATCTTAACGACTTTGCTATCTTGTCTTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAGAAGAAACCAGATGGAACTCCGCATATCACTTATACACATTCCAAGAGCATGAGGGCTTTGCCTTTGAATACAGGAAAACACCTACGATGA 1296 0.4306 MEMDNNNNKCGCWSVLKRGVCKPSASSRHSPNTIPRTSVVHDAATETRYLNASNRELCPPKEARLSSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKIAQLAYSCLSRDPKCRPNMDEVVNALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRALPLNTGKHLR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04354 431 SUPERFAMILY Protein kinase-like (PK-like) 80 385 IPR011009 -
Trre16g04354 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Trre16g04354 431 Pfam Protein tyrosine and serine/threonine kinase 102 377 IPR001245 GO:0004672|GO:0006468
Trre16g04354 431 ProSiteProfiles Protein kinase domain profile. 98 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04354 431 FunFam Serine/threonine-protein kinase BIK1 66 183 - -
Trre16g04354 431 MobiDBLite consensus disorder prediction 56 78 - -
Trre16g04354 431 CDD STKc_IRAK 104 380 - -
Trre16g04354 431 ProSitePatterns Protein kinases ATP-binding region signature. 104 136 IPR017441 GO:0005524
Trre16g04354 431 Gene3D Phosphorylase Kinase; domain 1 74 183 - -
Trre16g04354 431 FunFam Probable serine/threonine-protein kinase PBL8 184 399 - -
Trre16g04354 431 PANTHER OS01G0588500 PROTEIN-RELATED 65 381 - -
Trre16g04354 431 Gene3D Transferase(Phosphotransferase) domain 1 184 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04354 Trre-Chr16 48458425 48461261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04354 86 392 Glycoside Hydrolase AT3G07070 54.662 7.23e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g04354 PK_Tyr_Ser-Thr 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04354 - - gmx:100785385 808.135