Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04351 ATGGAGCTTCATTTGGGCCTTGCTCTCTCCACTTATAATTCTTGTGCCTATGATCCTACTACTAAAATCCATTTCCCTTTGAACCATAATACTAATAATAAGAAACGTAGTTTTTCCCATCTAGTCTTTGAGCATGCAGCTGAAAATTCTAGTACTACCAACTTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCATTCAGATGATCATGATCATCAACACTGCAGTCATAGTTCCAACACCACCATCACCAAGAGCGATGATAATGAAGAAGAAGCTTTAATTGGATGGCCCCCGGTTAATCATCAAAGGAAGAAACATCGTTGTAATGATGAAGAGGATGATTATGATCATAATCAGAGGAATTTTGTGAAGGTGAAGATGGAGGGTGAAGGAATAGCTAGAAAGGTTAATCTAACTATGCACCATTCATTTCACACTCTCAACCAAACTTTGATCAACATGTTTGGAAAATCAGGTGATAGTCAACAATATGAATTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGGTAA 561 0.3832 MELHLGLALSTYNSCAYDPTTKIHFPLNHNTNNKKRSFSHLVFEHAAENSSTTNFPTLSLLPLTPGHSDDHDHQHCSHSSNTTITKSDDNEEEALIGWPPVNHQRKKHRCNDEEDDYDHNQRNFVKVKMEGEGIARKVNLTMHHSFHTLNQTLINMFGKSGDSQQYELVYQDKEGDWLLAQDISWR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04351 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 185 IPR003311 GO:0005634|GO:0006355
Trre16g04351 186 ProSiteProfiles PB1 domain profile. 122 186 IPR000270 GO:0005515
Trre16g04351 186 Pfam AUX/IAA family 29 158 IPR033389 -
Trre16g04351 186 SUPERFAMILY CAD & PB1 domains 118 185 - -
Trre16g04351 186 Gene3D - 117 186 - -
Trre16g04351 186 MobiDBLite consensus disorder prediction 65 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04351 Trre-Chr16 48388646 48389455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04351 114 185 B3 DNA Binding Superfamily AT3G61830 33.333 1.73e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g04351 AUX_IAA 1.5e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04351 K14484 - gmx:100808466 165.622