Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04349 ATGGAGCTTCATTTGGGCCTTGCTCTCTCCACTTATAATTCTTGTGCCTATGATCCTACTACTAAAATCCATTTCCCTTTGAACCATAATACTAATAATAAGAAACGTAGTTTTTCCCATCTAGTCTTTGAGCATGCAGCTGAAAATTCTAGTACTACCAACTTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCATTCAGATGATCATGATCATCAACACTGCAGTCATAGTTCCAACACCACCATCACCAAGAGCGATGATAATGAAGAAGAAGCTTTAATTGGATGGCCCCCGGTTAATCATCAAAGGAAGAAACATCGTTGTAATGATGAAGAGGATGATTATGATCATAATCAGAGGAATTTTGTGAAGGTGAAGATGGAGGGTGAAGGAATAGCTAGAAAGGTTAATCTAACTATGCACCATTCATTTCACACTCTCAACCAAACTTTGATCAACATGTTTGGAAAATCAGGTGATAGTCAACAATATGAATTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTCACTCAATGTGCGCAACGCCTCAAATTGCTGAAGAGCAGATAA 606 0.3878 MELHLGLALSTYNSCAYDPTTKIHFPLNHNTNNKKRSFSHLVFEHAAENSSTTNFPTLSLLPLTPGHSDDHDHQHCSHSSNTTITKSDDNEEEALIGWPPVNHQRKKHRCNDEEDDYDHNQRNFVKVKMEGEGIARKVNLTMHHSFHTLNQTLINMFGKSGDSQQYELVYQDKEGDWLLAQDISWRSFTQCAQRLKLLKSR 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04349 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 200 IPR003311 GO:0005634|GO:0006355
Trre16g04349 201 Pfam AUX/IAA family 163 200 IPR033389 -
Trre16g04349 201 Pfam AUX/IAA family 29 158 IPR033389 -
Trre16g04349 201 ProSiteProfiles PB1 domain profile. 122 201 IPR000270 GO:0005515
Trre16g04349 201 Gene3D - 117 201 - -
Trre16g04349 201 MobiDBLite consensus disorder prediction 65 90 - -
Trre16g04349 201 SUPERFAMILY CAD & PB1 domains 118 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04349 Trre-Chr16 48385769 48389455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04349 122 200 B3 DNA Binding Superfamily AT1G19220 33.333 2.68e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g04349 AUX_IAA 1.8e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04349 K14484 - gmx:100808466 183.726