Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04348 ATGGAGCTTCATTTGGGCCTTGCTCTCTCCACTTATAATTCTTGTGCCTATGATCCTACTACTAAAATCCATTTCCCTTTGAACCATAATACTAATAATAAGAAACGTAGTTTTTCCCATCTAGTCTTTGAGCATGCAGCTGAAAATTCTAGTACTACCAACTTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCATTCAGATGATCATGATCATCAACACTGCAGTCATAGTTCCAACACCACCATCACCAAGAGCGATGATAATGAAGAAGAAGCTTTAATTGGATGGCCCCCGGTTAATCATCAAAGGAAGAAACATCGTTGTAATGATGAAGAGGATGATTATGATCATAATCAGAGGAATTTTGTGAAGGTGAAGATGGAGGGTGAAGGAATAGCTAGAAAGGTTAATCTAACTATGCACCATTCATTTCACACTCTCAACCAAACTTTGATCAACATGTTTGGAAAATGTGATAGTCAACAATATGAATTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTCACTCAATGTGCGCAACGCCTCAAATTGCTGAAGAGCAGATAA 603 0.3864 MELHLGLALSTYNSCAYDPTTKIHFPLNHNTNNKKRSFSHLVFEHAAENSSTTNFPTLSLLPLTPGHSDDHDHQHCSHSSNTTITKSDDNEEEALIGWPPVNHQRKKHRCNDEEDDYDHNQRNFVKVKMEGEGIARKVNLTMHHSFHTLNQTLINMFGKCDSQQYELVYQDKEGDWLLAQDISWRSFTQCAQRLKLLKSR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04348 200 MobiDBLite consensus disorder prediction 64 90 - -
Trre16g04348 200 Pfam AUX/IAA family 161 199 IPR033389 -
Trre16g04348 200 Pfam AUX/IAA family 29 160 IPR033389 -
Trre16g04348 200 SUPERFAMILY CAD & PB1 domains 118 196 - -
Trre16g04348 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 199 IPR003311 GO:0005634|GO:0006355
Trre16g04348 200 ProSiteProfiles PB1 domain profile. 122 200 IPR000270 GO:0005515
Trre16g04348 200 Gene3D - 117 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04348 Trre-Chr16 48385769 48389455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04348 122 199 B3 DNA Binding Superfamily AT1G19220 32.143 5.58e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g04348 AUX_IAA 1.7e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04348 K14484 - gmx:100808466 189.504