Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04338 ATGGCATCTTCTATAGTTATTTTGATCAACCAAATCAAACAATTGCTTGAAGGAGGTCTTGAAAACTTGCTTGAAAATGCAGAAAATTTTTCAAGCTATGTTGAAGAGCTTTCATCTCGTATTTGGTCATTAACAAATGAGCAAACAAACTTCTTCACCTACCTGGTTAGAGTGCAGCAACACATTTCACTTTCTGAAAACCAATGGAGATCAGATCAGCATCTCACGGTTATTGAATCTACTCCTTTGGCTGAAGAGGGTTCCAAGGCAGAGTCCAATATAGCAGGTTTACCTCCAAAATTTCAATCTTTGTCCTTTCAATTCCATAACATGGTAATCGCTGTTAGGTTATTGACCCTAAGAAAGAGACGGACAACTCTCCATGATGTGAGCAAAAAAGTAGAAATACTTGCTAAGAGACCCTTATTGCCCAGCGACATAGCTAAAATTCTGTATATCCTTCCTACTGGCATAAAGATTGAGAGGACACTAAGTTATGATCCAAAATCATGGTGCATGGTACCCGATTTAAATATTGACTTGGTATTTGATGATGTAAATGGTGTTCATCAGCATTCTGATTATTTAGCATTGGAGGAATACTTCAATTTACGACTTGTACAGTATTTTGAAGATAATCCCGAGGTGGTAGATATTCCGGAAGCAGCATTACCGCCACGAAGCATTTAG 690 0.3797 MASSIVILINQIKQLLEGGLENLLENAENFSSYVEELSSRIWSLTNEQTNFFTYLVRVQQHISLSENQWRSDQHLTVIESTPLAEEGSKAESNIAGLPPKFQSLSFQFHNMVIAVRLLTLRKRRTTLHDVSKKVEILAKRPLLPSDIAKILYILPTGIKIERTLSYDPKSWCMVPDLNIDLVFDDVNGVHQHSDYLALEEYFNLRLVQYFEDNPEVVDIPEAALPPRSI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04338 229 PANTHER DNA REPLICATION FACTOR CDT1 92 227 IPR045173 GO:0003677|GO:0030174|GO:0071163
Trre16g04338 229 Pfam DNA replication factor CDT1 like 97 161 IPR014939 -
Trre16g04338 229 SUPERFAMILY "Winged helix" DNA-binding domain 95 226 IPR036390 -
Trre16g04338 229 Coils Coil 20 40 - -
Trre16g04338 229 SMART CDT1_2 97 226 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04338 Trre-Chr16 48286315 48290842 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04338 97 215 Core DNA Replication Machinery Family AT2G31270 32.787 8.61e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04338 - K10727 fve:101305854 107.071