Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04336 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAAATGGACGTATTGGTTCGCGCAAGTATGTTCGTAAAATACATAAAGGGGTTATTTATGTTCAAGCTGGTTTCAACAATACCATTGTGACTGTTACAGATCTACGAGGTCGGGTGATTTCTTGGTCCTCTGCCGGTTCATGTGGATTCAAAGGTACACGAAGAAGTACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGAACAGTAGTCGATCGAGGCATGCAACGAGCAGAAGTCATAATAAAAGGTCCCGGTCAGGGAAGAGATGCGGCATTAAGAGCTATTTGTAGAAGTGGTATACGATTAAGGTTTCTACGAGATGTAACACCTCTGCCACATAATGGATGTCAAGCAGATACAATAGGCATTGCAATGCGAAGAATTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGTAGGTATTCAAGAATCAATACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGAGACGCGTCCATTTGTTTCAAAGGTCCTGGATATGTAACCGCTCAAGACATTATTTTACCACCTTCGGTGGAAATCGTGGATAATACACAACATATAGCTAACCTAACAGAACCTATTAATTTGTGTATTGAATTACAAATTGAGAGGAAGCGGGGATATCGTATAAAAACGATAGACAACATTCAAGATGGAAGTTATACTATAGATGATGTATTCATGCCTGTTAGAAATGCAAATCATAGTATTCATTCTTATGTGAACGGTAATGAAAAACAAGAGATGCTCTTTCTCGAAATATGGACAAATGGAAGTTTAACCCCGAAGGAAGCACTTTATGAAGCCTCCCGGAATTTGATTGATTTGTTTATTCCTTTTTTACATGCAGAAGAAGAAAACTTTAATTTTGAAAACAATCAACACAAAGTTACTTTACCCCTGTTTACTTTTCATGATAGATTAGTTAAGGATAAACTAAGGAAAAGTAAAAAAGAAATTGGATTTCAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAGGATCTATAATTGTCTTAAAAAGTCCAATATACATACATTATTGGAACTTTTGAATAAGAGTCAAGAAGACCTTATGAAAATGGAACATTTTCGCGTAGAAGATCCATTTCAGCCCACCCAAGCTGCTCTTCCGACATCTCTTGCTGGATGGATGGCTAACCCTTCTGCAGTTCCACACCCTTCAGCTTCTGCAGGAGTAGGACCATTAGGTTTGGCTCAAGCTAATAATGCAGCTCTGTTAAAGCGCCCCAGAACTCCTCCCAACAATAACCCAGCTATGGACTATCAAACTGCAGATTCAGATCATGTACTGAAGAGAACAAGACCTTTTGGCATATCAGATGAAGTACATTTGTTTCCTGTTGGATACTCGAGCCAGAGCCATGGTCAGAGTTCCTATTCCTCTGATGACTTGCCCAAGAATGCTGTGTTGACTCTCAACCAAGGTTCAAGTGTCAAAAGTATGGACTTCCATCCACTTCAGCAAATTCTCCTTCTTGTTGGAACAAACATGGGCGATGTTATGGTGTGGGATATAGGTAGTCGTGAAAGGATTGCTCATAGAAATTTTAAGGTTTGGGAACTTGGAGTCTGCTCAGTGGCTTTACAGGCGTCCCTTTCCAATGAGTACACAGCCTCAGTTAATCGTGTGGTCTGGAGTCCTGATGGAACACTTTGCAGTGTTGCTTATTCTAAACATATTGTCCACATATATTCCTATCATGGTAGGGATGATCTGAGAAACCACCTAGAGATTGAGGCTCATGCTGGGAGTGTCAATGATCTTGCCTTTTCTTATCCAAATAAACAGCTTTGTGTTGTAACATGTGGAGATGATAGGGTCATCAAGGTATGGGATGCAGTCACCGGTGCAAAGCAATATACTTTTGAGGGTCATGAAGCGCCTGTATATTCTGTATGCCCTCATCACAAAGAAAATATTCAGTTCATCTTCTCAACAGCAACTGATGGAAAAATAAAGGCATGGCTGTATGATAACATGGGATCTAGGGTTGACTATGATGCACCTGGCCATTCATCTACCACAATGTCATATAGTGCTGATGGAACAAGATTGTTTTCGTGCGGCACAAATAAAGAAGGGGAGTCATTTCTAGTGGAATGGAATGAAAGTGAAGGAGCTGTGAAGCGTACATATCACGGTCTTGGGAAGAGATCTGCAGGTGTTGTACAATTTGATACCACTAAGAATAGGTTCTTAGCTGCTGGTGATGAGTTTACGATCAAATTCTGGGACATGGATAACACAAGCTTGTTGACAAGTATTGATGCAGATGGTGGATTACTGGCTTCTCCATGTATTAGATTTAACAAGGAAGGAATACTATTGGCTGTCTCCACAAGTGACAATGGAGTTAAAATTTTAGCAAATGCCGAAGGTATTAGACTGCTCCGGACGGTGGAGAGTCGTACATTTGATGCTTCCAGAGTTGCTTCCGCAGCTGCCGTGAAGGCACCTACTATCGGCGCTTTTCCATCTACCAATGCTGCTGTTGTAACAAGCCTTGCTGATAGAACTCCTCCAGTAGCAGCCATGGTTGGGCTTAATAATGATTCTCGAAGCTTAGCTGATGTCAAACCCAGAATTGTTGATGAAGCTGTGGAAAAATCTAGGATATGGAAGCTAACAGAAATTAACGAACCGTCACAATGCCGTTCCTTGAAACTTCCTGATGGTTTATCATCAATGAGGGTTTCTAGATTAATTTATACAAACCAAGGGGTTGCGATTTTAGCCTTGGCAGCAAATGCTGTTCACAAGCTTTGGAAATGGCAGAAAAATGACCGTAACACTTCAGGCAAGGCCACTGCCAGTCTTCAACCACAACTATGGCAACCATCTAGTGGAATATTGATGACTAACGATATAGGTGATACTAACCCAGAGGATGCTGTGTCATGTTTTGCGCTTTCCAAGAATGACTCGTATGTTATGTCTGCTTCTGGAGGAAAAATTTCCCTGTTCAATATGATGACATTCAAGACAATGACAACTTTCATGCCACCACCACCAGCTGCTACATTTCTTGCATTTCATCCTCAAGATAACAATATTATTGCTATTGGCATGGATGACTCTTCCATACAAATTTATAATGTCCGAGTGGATGAGGTCAAAACCAAGCTAAAAGGTCATCAGAAGAGAATCACTGGTCTTGCTTTTTCTCATGTTCTAAATGTTCTTGTATCATCTGGAGCCTTTTACCCTATAGCGTTTCCAAAAGCTAAAAGCCATCTTTAA 3384 0.4028 MAKSIPKIGSRKNGRIGSRKYVRKIHKGVIYVQAGFNNTIVTVTDLRGRVISWSSAGSCGFKGTRRSTPFAAQTAAGNAIRTVVDRGMQRAEVIIKGPGQGRDAALRAICRSGIRLRFLRDVTPLPHNGCQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTIDNIQDGSYTIDDVFMPVRNANHSIHSYVNGNEKQEMLFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENFNFENNQHKVTLPLFTFHDRLVKDKLRKSKKEIGFQSIFIDQLELPPRIYNCLKKSNIHTLLELLNKSQEDLMKMEHFRVEDPFQPTQAALPTSLAGWMANPSAVPHPSASAGVGPLGLAQANNAALLKRPRTPPNNNPAMDYQTADSDHVLKRTRPFGISDEVHLFPVGYSSQSHGQSSYSSDDLPKNAVLTLNQGSSVKSMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAHRNFKVWELGVCSVALQASLSNEYTASVNRVVWSPDGTLCSVAYSKHIVHIYSYHGRDDLRNHLEIEAHAGSVNDLAFSYPNKQLCVVTCGDDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTATDGKIKAWLYDNMGSRVDYDAPGHSSTTMSYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGKRSAGVVQFDTTKNRFLAAGDEFTIKFWDMDNTSLLTSIDADGGLLASPCIRFNKEGILLAVSTSDNGVKILANAEGIRLLRTVESRTFDASRVASAAAVKAPTIGAFPSTNAAVVTSLADRTPPVAAMVGLNNDSRSLADVKPRIVDEAVEKSRIWKLTEINEPSQCRSLKLPDGLSSMRVSRLIYTNQGVAILALAANAVHKLWKWQKNDRNTSGKATASLQPQLWQPSSGILMTNDIGDTNPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGAFYPIAFPKAKSHL 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04336 1127 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 134 315 IPR011263 GO:0003899|GO:0006351
Trre16g04336 1127 FunFam DNA-directed RNA polymerase subunit alpha 149 266 - -
Trre16g04336 1127 SMART rpoldneu2 115 322 IPR011263 GO:0003899|GO:0006351
Trre16g04336 1127 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 149 267 IPR036643 -
Trre16g04336 1127 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 361 408 - -
Trre16g04336 1127 Gene3D - 485 684 IPR015943 GO:0005515
Trre16g04336 1127 Gene3D - 361 407 - -
Trre16g04336 1127 Gene3D Ribosomal protein S11 13 134 IPR036967 GO:0003735|GO:0005840|GO:0006412
Trre16g04336 1127 Pfam WD domain, G-beta repeat 665 703 IPR001680 GO:0005515
Trre16g04336 1127 Pfam WD domain, G-beta repeat 626 660 IPR001680 GO:0005515
Trre16g04336 1127 Pfam Ribosomal protein S11 28 132 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre16g04336 1127 SUPERFAMILY RBP11-like subunits of RNA polymerase 126 321 IPR036603 GO:0006351|GO:0046983
Trre16g04336 1127 SUPERFAMILY WD40 repeat-like 521 835 IPR036322 GO:0005515
Trre16g04336 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 626 669 IPR001680 GO:0005515
Trre16g04336 1127 Gene3D - 149 266 IPR036643 -
Trre16g04336 1127 SUPERFAMILY WD40 repeat-like 1008 1113 IPR036322 GO:0005515
Trre16g04336 1127 NCBIfam DNA-directed RNA polymerase subunit alpha 129 406 IPR011773 GO:0003677|GO:0003899|GO:0006351
Trre16g04336 1127 FunFam Topless-related protein 1 493 711 - -
Trre16g04336 1127 Gene3D - 892 1115 IPR015943 GO:0005515
Trre16g04336 1127 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 400 1114 IPR027728 GO:0006355
Trre16g04336 1127 CDD RNAP_alpha_NTD 131 319 - -
Trre16g04336 1127 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Trre16g04336 1127 Pfam RNA polymerase Rpb3/RpoA insert domain 156 248 IPR011262 GO:0003899|GO:0006351|GO:0046983
Trre16g04336 1127 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre16g04336 1127 Gene3D - 685 865 IPR015943 GO:0005515
Trre16g04336 1127 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 357 404 IPR011260 GO:0003677|GO:0003899|GO:0006351
Trre16g04336 1127 SMART WD40_4 995 1037 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 513 552 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 1083 1121 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 1040 1080 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 753 793 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 619 660 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 663 704 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 573 613 IPR001680 GO:0005515
Trre16g04336 1127 SMART WD40_4 709 750 IPR001680 GO:0005515
Trre16g04336 1127 SUPERFAMILY Translational machinery components 23 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04336 Trre-Chr16 48250418 48260410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04336 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 36.364 4.92e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04336 - - gmx:100805156 1275