Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04335 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAAATGGACGTATTGGTTCGCGCAAGTATGTTCGTAAAATACATAAAGGGGTTATTTATGTTCAAGCTGGTTTCAACAATACCATTGTGACTGTTACAGATCTACGAGGTCGGGTGATTTCTTGGTCCTCTGCCGGTTCATGTGGATTCAAAGGTACACGAAGAAGTACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGAACAGTAGTCGATCGAGGCATGCAACGAGCAGAAGTCATAATAAAAGGTCCCGGTCAGGGAAGAGATGCGGCATTAAGAGCTATTTGTAGAAGTGGTATACGATTAAGGGTAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAAGGTCAAGCAGATACAATAGGCATTGCAATGCGAAGAATTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGTAGGTATTCAAGAATCAATACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGAGACGCGTCCATTTGTTTCAAAGGTCCTGGATATGTAACCGCTCAAGACATTATTTTACCACCTTCGGTGGAAATCGTGGATAATACACAACATATAGCTAACCTAACAGAACCTATTAATTTGTGTATTGAATTACAAATTGAGAGGAAGCGGGGATATCGTATAAAAACGATAGACAACATTCAAGATGGAAGTTATACTATAGATGATGTATTCATGCCTGTTAGAAATGCAAATCATAGTATTCATTCTTATGTGAACGGTAATGAAAAACAAGAGATGCTCTTTCTCGAAATATGGACAAATGGAAGTTTAACCCCGAAGGAAGCACTTTATGAAGCCTCCCGGAATTTGATTGATTTGTTTATTCCTTTTTTACATGCAGAAGAAGAAAACTTTAATTTTGAAAACAATCAACACAAAGTTACTTTACCCCTGTTTACTTTTCATGATAGATTAGTTAAGGATAAACTAAGGAAAAGTAAAAAAGAAATTGGATTTCAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAGGATCTATAATTGTCTTAAAAAGTCCAATATACATACATTATTGGAACTTTTGAATAAGAGTCAAGAAGACCTTATGAAAATGGAACATTTTCGCGTAGAAGATCCCACCCAAGCTGCTCTTCCGACATCTCTTGCTGGATGGATGGCTAACCCTTCTGCAGTTCCACACCCTTCAGCTTCTGCAGGAGTAGGACCATTAGGTTTGGCTCAAGCTAATAATGCAGCTCTGTTAAAGCGCCCCAGAACTCCTCCCAACAATAACCCAGCTATGGACTATCAAACTGCAGATTCAGATCATGTACTGAAGAGAACAAGACCTTTTGGCATATCAGATGAAGTACATTTGTTTCCTGTTGGATACTCGAGCCAGAGCCATGGTCAGAGTTCCTATTCCTCTGATGACTTGCCCAAGAATGCTGTGTTGACTCTCAACCAAGGTTCAAGTGTCAAAAGTATGGACTTCCATCCACTTCAGCAAATTCTCCTTCTTGTTGGAACAAACATGGGCGATGTTATGGTGTGGGATATAGGTAGTCGTGAAAGGATTGCTCATAGAAATTTTAAGGTTTGGGAACTTGGAGTCTGCTCAGTGGCTTTACAGGCGTCCCTTTCCAATGAGTACACAGCCTCAGTTAATCGTGTGGTCTGGAGTCCTGATGGAACACTTTGCAGTGTTGCTTATTCTAAACATATTGTCCACATATATTCCTATCATGGTAGGGATGATCTGAGAAACCACCTAGAGATTGAGGCTCATGCTGGGAGTGTCAATGATCTTGCCTTTTCTTATCCAAATAAACAGCTTTGTGTTGTAACATGTGGAGATGATAGGGTCATCAAGGTATGGGATGCAGTCACCGGTGCAAAGCAATATACTTTTGAGGGTCATGAAGCGCCTGTATATTCTGTATGCCCTCATCACAAAGAAAATATTCAGTTCATCTTCTCAACAGCAACTGATGGAAAAATAAAGGCATGGCTGTATGATAACATGGGATCTAGGGTTGACTATGATGCACCTGGCCATTCATCTACCACAATGTCATATAGTGCTGATGGAACAAGATTGTTTTCGTGCGGCACAAATAAAGAAGGGGAGTCATTTCTAGTGGAATGGAATGAAAGTGAAGGAGCTGTGAAGCGTACATATCACGGTCTTGGGAAGAGATCTGCAGGTGTTGTACAATTTGATACCACTAAGAATAGGTTCTTAGCTGCTGGTGATGAGTTTACGATCAAATTCTGGGACATGGATAACACAAGCTTGTTGACAAGTATTGATGCAGATGGTGGATTACTGGCTTCTCCATGTATTAGATTTAACAAGGAAGGAATACTATTGGCTGTCTCCACAAGTGACAATGGAGTTAAAATTTTAGCAAATGCCGAAGGTATTAGACTGCTCCGGACGGTGGAGAGTCGTACATTTGATGCTTCCAGAGTTGCTTCCGCAGCTGCCGTGAAGGCACCTACTATCGGCGCTTTTCCATCTACCAATGCTGCTGTTGTAACAAGCCTTGCTGATAGAACTCCTCCAGTAGCAGCCATGGTTGGGCTTAATAATGATTCTCGAAGCTTAGCTGATGTCAAACCCAGAATTGTTGATGAAGCTGTGGAAAAATCTAGGATATGGAAGCTAACAGAAATTAACGAACCGTCACAATGCCGTTCCTTGAAACTTCCTGATGGTTTATCATCAATGAGGGTTTCTAGATTAATTTATACAAACCAAGGGGTTGCGATTTTAGCCTTGGCAGCAAATGCTGTTCACAAGCTTTGGAAATGGCAGAAAAATGACCGTAACACTTCAGGCAAGGCCACTGCCAGTCTTCAACCACAACTATGGCAACCATCTAGTGGAATATTGATGACTAACGATATAGGTGATACTAACCCAGAGGATGCTGTGTCATGTTTTGCGCTTTCCAAGAATGACTCGTATGTTATGTCTGCTTCTGGAGGAAAAATTTCCCTGTTCAATATGATGACATTCAAGACAATGACAACTTTCATGCCACCACCACCAGCTGCTACATTTCTTGCATTTCATCCTCAAGATAACAATATTATTGCTATTGGCATGGATGACTCTTCCATACAAATTTATAATGTCCGAGTGGATGAGGTCAAAACCAAGCTAAAAGGTCATCAGAAGAGAATCACTGGTCTTGCTTTTTCTCATGTTCTAAATGTTCTTGTATCATCTGGAGCCTTTTACCCTATAGCGTTTCCAAAAGCTAAAAGCCATCTTTAA 3393 0.4023 MAKSIPKIGSRKNGRIGSRKYVRKIHKGVIYVQAGFNNTIVTVTDLRGRVISWSSAGSCGFKGTRRSTPFAAQTAAGNAIRTVVDRGMQRAEVIIKGPGQGRDAALRAICRSGIRLRVDSKRLYYGRFILSPLMKGQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTIDNIQDGSYTIDDVFMPVRNANHSIHSYVNGNEKQEMLFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENFNFENNQHKVTLPLFTFHDRLVKDKLRKSKKEIGFQSIFIDQLELPPRIYNCLKKSNIHTLLELLNKSQEDLMKMEHFRVEDPTQAALPTSLAGWMANPSAVPHPSASAGVGPLGLAQANNAALLKRPRTPPNNNPAMDYQTADSDHVLKRTRPFGISDEVHLFPVGYSSQSHGQSSYSSDDLPKNAVLTLNQGSSVKSMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAHRNFKVWELGVCSVALQASLSNEYTASVNRVVWSPDGTLCSVAYSKHIVHIYSYHGRDDLRNHLEIEAHAGSVNDLAFSYPNKQLCVVTCGDDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTATDGKIKAWLYDNMGSRVDYDAPGHSSTTMSYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGKRSAGVVQFDTTKNRFLAAGDEFTIKFWDMDNTSLLTSIDADGGLLASPCIRFNKEGILLAVSTSDNGVKILANAEGIRLLRTVESRTFDASRVASAAAVKAPTIGAFPSTNAAVVTSLADRTPPVAAMVGLNNDSRSLADVKPRIVDEAVEKSRIWKLTEINEPSQCRSLKLPDGLSSMRVSRLIYTNQGVAILALAANAVHKLWKWQKNDRNTSGKATASLQPQLWQPSSGILMTNDIGDTNPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGAFYPIAFPKAKSHL 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04335 1130 Pfam Ribosomal protein S11 28 116 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre16g04335 1130 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 155 273 IPR036643 -
Trre16g04335 1130 Pfam RNA polymerase Rpb3/RpoA insert domain 162 254 IPR011262 GO:0003899|GO:0006351|GO:0046983
Trre16g04335 1130 SMART WD40_4 712 753 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 998 1040 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 756 796 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 622 663 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 1086 1124 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 516 555 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 666 707 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 576 616 IPR001680 GO:0005515
Trre16g04335 1130 SMART WD40_4 1043 1083 IPR001680 GO:0005515
Trre16g04335 1130 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 363 410 IPR011260 GO:0003677|GO:0003899|GO:0006351
Trre16g04335 1130 Gene3D - 367 413 - -
Trre16g04335 1130 CDD RNAP_alpha_NTD 117 325 - -
Trre16g04335 1130 FunFam DNA-directed RNA polymerase subunit alpha 155 272 - -
Trre16g04335 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 672 IPR001680 GO:0005515
Trre16g04335 1130 Hamap DNA-directed RNA polymerase subunit alpha [rpoA]. 106 432 IPR011773 GO:0003677|GO:0003899|GO:0006351
Trre16g04335 1130 SUPERFAMILY WD40 repeat-like 524 838 IPR036322 GO:0005515
Trre16g04335 1130 Gene3D - 688 868 IPR015943 GO:0005515
Trre16g04335 1130 SUPERFAMILY WD40 repeat-like 1012 1116 IPR036322 GO:0005515
Trre16g04335 1130 Pfam WD domain, G-beta repeat 668 706 IPR001680 GO:0005515
Trre16g04335 1130 Pfam WD domain, G-beta repeat 629 663 IPR001680 GO:0005515
Trre16g04335 1130 Coils Coil 1130 1130 - -
Trre16g04335 1130 Gene3D - 488 687 IPR015943 GO:0005515
Trre16g04335 1130 SMART rpoldneu2 125 328 IPR011263 GO:0003899|GO:0006351
Trre16g04335 1130 FunFam Topless-related protein 1 496 714 - -
Trre16g04335 1130 SUPERFAMILY RBP11-like subunits of RNA polymerase 114 327 IPR036603 GO:0006351|GO:0046983
Trre16g04335 1130 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre16g04335 1130 NCBIfam DNA-directed RNA polymerase subunit alpha 125 414 IPR011773 GO:0003677|GO:0003899|GO:0006351
Trre16g04335 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 406 1117 IPR027728 GO:0006355
Trre16g04335 1130 Gene3D - 155 272 IPR036643 -
Trre16g04335 1130 SUPERFAMILY Translational machinery components 23 116 - -
Trre16g04335 1130 Gene3D - 895 1118 IPR015943 GO:0005515
Trre16g04335 1130 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 367 416 - -
Trre16g04335 1130 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 131 321 IPR011263 GO:0003899|GO:0006351
Trre16g04335 1130 Gene3D Ribosomal protein S11 13 125 IPR036967 GO:0003735|GO:0005840|GO:0006412
Trre16g04335 1130 Gene3D - 126 319 IPR036603 GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04335 Trre-Chr16 48250418 48260410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04335 28 116 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.714 3.54e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04335 - - gmx:100805156 1268.06