Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04332 ATGGTAATCGCTGTTAGGTTATTGACCCTAAGAAAGAGACGGACAACTTTCCATGATGTGAGCAAAAAAGTAGAAATACTTGCTAAGAGACCCTTATTGCCCAGCGACATAGCTAAAATTCTGTATATCCTTCCTACTGGCATAAAGATTGAGAGGACACTTAGTTATGATCCAAAATCATGGTGCATGGTACCGGATTTAAAGATTGACTTGGTATTTGATGATGTAAATGGTGTTCATCAGCATTCTGATTATCTAGCATTGGAGGAATACTTCAATTTACGACTTGTACAGTATTTTGAAGATAATCCCGAGGTGGTAGATATTCCGGAAGCAGCATTACCGCCACGAAGCATTTAG 360 0.3889 MVIAVRLLTLRKRRTTFHDVSKKVEILAKRPLLPSDIAKILYILPTGIKIERTLSYDPKSWCMVPDLKIDLVFDDVNGVHQHSDYLALEEYFNLRLVQYFEDNPEVVDIPEAALPPRSI 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04332 119 SUPERFAMILY "Winged helix" DNA-binding domain 3 116 IPR036390 -
Trre16g04332 119 PANTHER DNA REPLICATION FACTOR CDT1 1 117 IPR045173 GO:0003677|GO:0030174|GO:0071163
Trre16g04332 119 SMART CDT1_2 1 116 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04332 Trre-Chr16 48236839 48237299 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04332 7 105 Core DNA Replication Machinery Family AT2G31270 35.294 1.97e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04332 - K10727 fve:101305854 102.064