Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04315 ATGTCAAGCTGCAGCATCGATGTTGCACCTGCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATAGTGACCGTTCGATGTGGTCACTGCACAAATCTATGGTCTGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGAGCTAGCCAGGGCATGAATAATAATCCAGAATATAGGATTAGAACTGCAGGAGGAACAAGTTCGAAATACAGCAACGATAGGATTGCAATGCGTACTACTACTGCACCACCAGCAACCACTCAAGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTATAACCAGTTCATAAAGGAAGAGATTCAGAGGATTAAGGCTAATAATCCTGATATTAGTCACAGAGAAGCTTTTAGTACTGCTGCCAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTCATGTTGGAGACCAACAATCAAGCTAAGATGGAGAATGTATCTGAGAAGCGTTTGATGTCAAGGGCTGCGTTAATGAACAAATGA 588 0.4473 MSSCSIDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGASQGMNNNPEYRIRTAGGTSSKYSNDRIAMRTTTAPPATTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQAKMENVSEKRLMSRAALMNK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04315 195 Gene3D High mobility group box domain 106 186 IPR036910 -
Trre16g04315 195 Pfam YABBY protein 10 168 IPR006780 GO:0007275
Trre16g04315 195 CDD HMG-box_SF 122 158 - -
Trre16g04315 195 SUPERFAMILY HMG-box 105 161 IPR036910 -
Trre16g04315 195 PANTHER PROTEIN YABBY 6-RELATED 1 178 IPR006780 GO:0007275
Trre16g04315 195 FunFam Axial regulator YABBY 113 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04315 Trre-Chr16 48085545 48090087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04315 7 178 C2C2-YABBY Transcription Factor Family AT2G26580 72.674 8.33e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre16g04315 YABBY 6.1e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04315 K25796 - gmx:100804731 317.775