Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04299 ATGGTTCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCAGAAATAAGACACCCTCTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCAAGAGCTTATGATCAAGCAGCAATTTTAATGAGTGGTAGAAATGCAAAAACAAATTTCCCAATAACACAAACTCCTGAAGGTGATCCAAAGAGTAGTACTAACCCTAATCAAGACAAACCTTCAACTTCATCAAAAGATCTAGAAGAAATCTTACACGCTAAGCTTCGAAAATGTGGCAAATTACCATCTCCTTCAATGACTTGTTTAAGGCTTGACACAGAAAATTCTCACATTGGTGTGTGGCAAAAACGTGCTGGTAAGTGTTCTGATTCAAATTGGGTTATGACTGTTCAACTTGGAAAAAAGAAGAGTATTATAACCGAAAATAGTAGCGGTAGTAGCAGTAGTAGTGTTGTGCCTTCATCGGTGGTGGCAACGGAGGAGGAGATTGTGCGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAGGAACTTCTTAATGACAAGAATTGTCCTAGTCCATCAATTAACAATACTAAACAAGATGATATTGATAACACTTTTTTTCTTTAA 654 0.3823 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTNPNQDKPSTSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKKKSIITENSSGSSSSSVVPSSVVATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNTKQDDIDNTFFL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04299 217 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Trre16g04299 217 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Trre16g04299 217 MobiDBLite consensus disorder prediction 60 84 - -
Trre16g04299 217 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Trre16g04299 217 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Trre16g04299 217 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Trre16g04299 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 156 - -
Trre16g04299 217 MobiDBLite consensus disorder prediction 60 88 - -
Trre16g04299 217 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Trre16g04299 217 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Trre16g04299 217 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Trre16g04299 217 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04299 Trre-Chr16 47919543 47921037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04299 1 194 AP2-EREBP Transcription Factor Family AT1G15360 62.189 4.30e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre16g04299 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04299 - - gsj:114375848 320.472