Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g04299 | ATGGTTCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCAGAAATAAGACACCCTCTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCAAGAGCTTATGATCAAGCAGCAATTTTAATGAGTGGTAGAAATGCAAAAACAAATTTCCCAATAACACAAACTCCTGAAGGTGATCCAAAGAGTAGTACTAACCCTAATCAAGACAAACCTTCAACTTCATCAAAAGATCTAGAAGAAATCTTACACGCTAAGCTTCGAAAATGTGGCAAATTACCATCTCCTTCAATGACTTGTTTAAGGCTTGACACAGAAAATTCTCACATTGGTGTGTGGCAAAAACGTGCTGGTAAGTGTTCTGATTCAAATTGGGTTATGACTGTTCAACTTGGAAAAAAGAAGAGTATTATAACCGAAAATAGTAGCGGTAGTAGCAGTAGTAGTGTTGTGCCTTCATCGGTGGTGGCAACGGAGGAGGAGATTGTGCGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAGGAACTTCTTAATGACAAGAATTGTCCTAGTCCATCAATTAACAATACTAAACAAGATGATATTGATAACACTTTTTTTCTTTAA | 654 | 0.3823 | MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTNPNQDKPSTSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKKKSIITENSSGSSSSSVVPSSVVATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNTKQDDIDNTFFL | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g04299 | 217 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
Trre16g04299 | 217 | Pfam | AP2 domain | 6 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 3 | 156 | - | - | |
Trre16g04299 | 217 | MobiDBLite | consensus disorder prediction | 60 | 88 | - | - | |
Trre16g04299 | 217 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Trre16g04299 | 217 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Trre16g04299 | 217 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g04299 | Trre-Chr16 | 47919543 | 47921037 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g04299 | 1 | 194 | AP2-EREBP Transcription Factor Family | AT1G15360 | 62.189 | 4.30e-77 | 228 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Trre16g04299 | AP2 | 8.6e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g04299 | - | - | gsj:114375848 | 320.472 |