Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04292 ATGGCCTCCATACTTGTTCTGTTATTATTACTGTTCTTGCTCATGCTATTTACATTAACAGAAGCCAGCACACGCGGTACAACTGCAAAATATAACTCCAGTATCATTCCGTTGGGGTCATGGCTCTCTCCTGAAGGCGAAAATACTTCGTGGCCATCAAGTTCTGGCCATTTTGCTTTCGGGTTTTACCCACACGGTAATGGTTTTGCTGTTGGAATATGGTTGGTTAATCCATCTGAAAACACAACCACTGTTGTTTGGACTGCTAACCGTGATGATCCAGCAGTCTCCTCTAATTCTATGTTGAATTTGACCAAGCAAGGCCTAATTTTTCAAAACGGAAAGGAAGATTCACCCAGCAATATAATCTTGAGAGATTCAGAGTCCGTCTATATGGCATCTATGCTAAATTCTGGAAACTTTGTGCTTTATTATGAGGATTCTTCTGTTGTCTGGCAAAGCTTTGATCACCCAACTGACACCATATTAGGAGGTCAAAATATGACAGATTATGATTCTTTATTTTCTAGTATGTCCAAATCAGACCATTCGCGTGGTCGTTTCTATCTCGACATGCAAGGTGATGGAAACCTTGTCGCTTACCATTATTACAGCTTCGCAAGTGATGAGGATGCTTACTGGGAGTGGGACAAACAAAGCTTTCTTTGCAGAAATTATGCTGAAAATAATGGACCCGGGCAAGCATGCCCGTCCCCAAGCTTGTACACGTCGTGCATCGGGGGGAACGTTGGTACTCGTTCTGTTAATTTTGCGGGAACTTATTATAGTTTATGTTTCAACAATAGAAATAAGCCTGGTGGGAAGAAGTTACACAATAACATAACATCAATCTACCGTGCAACACTAGATGTAGATGGAAACTTGAGATTGTATGAGCACCAATTTCACTCTGAGCAGGGAAACAATAGCTCTCGTGTGGTAATGTTGAGGCAAGCACTTAATGATACATGTCTAGTGAAGGGATTTTGTGGGTTGAACAGTTATTGCTTCTCCAACATGAGTGGCGATGCTGTCTGCGAGTGTTATCCCGGTTTCATCCCATCCATGACTAAAAGTAGTCATAACATGCCTATGGACTGCGTTCAGATGCTTAGCAAAGATGATTGTGAAAGAAATAAAGATCGGACGCTGTTGTATAATTTTACTCAATTTAGGAATATGTCTTGGGGTGATATTCCATATTCTGTTATACCCGTGTTAAAGATGGAAACTTGTGAGAAGGCTTGCCAACAAGATTGTGTTTGTGGAGGAGCAGTATATACAAATGGCAGCTGCAATAAATATAGACTTCCACTTATTTATGGCAGGGTTCAAAATGATTCCTCCACTGTGTCTGTGACCCTATTAAAGATTCCTTCTTCAACAATTGCCATTATTTCACCTCCAACCTCAAACGACACTAAGCCCAAGGGTGTTGTTGACAACAAGAGAAGTCTGATAATGACATTATCTCTTACTTTGGGTGTCGTTTCATTGATTTGCTTGGCCTTTGCATTGTCCATTTTCTTCGCTTACAGGCGTCAAGTTAATAGGTATTTAAAGTTGTCTGAAAGTGAAAAACTTGATTTTACAGAAGAATGTTCCCTGCGTTCATTTTCTTTTGAAGAACTTGCAAAATCAACTGGGGAGTTTTCAGAAGAGATAGGGAGAGGATCATTTGGAGCTGTTTATAAAGGCAAAATAGGCAACAATAACAGAAGTATTGCCGTGAAGAAACTGGAGGAGAAAATTGACGATGAAGGGGAGAGAGAATTCCAAGCAGAAATTACTGCTATTGCTCGAACTCATCATAGAAATTTGGTTAAGCTTATTGGTTTTTGTATAGAAGGATCCAAAAAGCTTCTTGTTTATGAATTTGTCAGCAAAGGATCTCTTGAAAAGCTCCTATTTGACGGGGTAACGAGACTATCATGGAAAGAGAAAATGAAACTTGCATTGGACGTGGCTAGTGGTCTGCTAAAAAGTATAGAGATGAATAATATTTCCTCGGCTGATGAAATCCTTCTCTCCAATTGGGTATATCAATGTTTTGCATCTGGACAATTAAACAAGCTAATCGCACATGATGAAAAAGATGTAGATTGGAAGATATTGGAAACAATGGTGAAAGTCGGGTTGTGGTGTGTGCAAGACCACCAATCTCTCCGTCCTGCAATGAAGAATGTAATCTTGATGTTAGAAGGTTTGAAAGATATTCCAGTTCCTCCCTCTCCAGCTCGATTGGTTTAG 2250 0.4004 MASILVLLLLLFLLMLFTLTEASTRGTTAKYNSSIIPLGSWLSPEGENTSWPSSSGHFAFGFYPHGNGFAVGIWLVNPSENTTTVVWTANRDDPAVSSNSMLNLTKQGLIFQNGKEDSPSNIILRDSESVYMASMLNSGNFVLYYEDSSVVWQSFDHPTDTILGGQNMTDYDSLFSSMSKSDHSRGRFYLDMQGDGNLVAYHYYSFASDEDAYWEWDKQSFLCRNYAENNGPGQACPSPSLYTSCIGGNVGTRSVNFAGTYYSLCFNNRNKPGGKKLHNNITSIYRATLDVDGNLRLYEHQFHSEQGNNSSRVVMLRQALNDTCLVKGFCGLNSYCFSNMSGDAVCECYPGFIPSMTKSSHNMPMDCVQMLSKDDCERNKDRTLLYNFTQFRNMSWGDIPYSVIPVLKMETCEKACQQDCVCGGAVYTNGSCNKYRLPLIYGRVQNDSSTVSVTLLKIPSSTIAIISPPTSNDTKPKGVVDNKRSLIMTLSLTLGVVSLICLAFALSIFFAYRRQVNRYLKLSESEKLDFTEECSLRSFSFEELAKSTGEFSEEIGRGSFGAVYKGKIGNNNRSIAVKKLEEKIDDEGEREFQAEITAIARTHHRNLVKLIGFCIEGSKKLLVYEFVSKGSLEKLLFDGVTRLSWKEKMKLALDVASGLLKSIEMNNISSADEILLSNWVYQCFASGQLNKLIAHDEKDVDWKILETMVKVGLWCVQDHQSLRPAMKNVILMLEGLKDIPVPPSPARLV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04292 749 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 216 IPR036426 -
Trre16g04292 749 ProSitePatterns Protein kinases ATP-binding region signature. 555 579 IPR017441 GO:0005524
Trre16g04292 749 FunFam S-receptor-like serine/threonine-protein kinase 519 626 - -
Trre16g04292 749 Gene3D - 32 155 IPR036426 -
Trre16g04292 749 Gene3D - 156 237 IPR036426 -
Trre16g04292 749 ProSiteProfiles Protein kinase domain profile. 549 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04292 749 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 669 744 - -
Trre16g04292 749 Gene3D Transferase(Phosphotransferase) domain 1 526 661 - -
Trre16g04292 749 SMART blect_4 42 158 IPR001480 -
Trre16g04292 749 ProSiteProfiles Bulb-type lectin domain profile. 33 156 IPR001480 -
Trre16g04292 749 Pfam D-mannose binding lectin 84 168 IPR001480 -
Trre16g04292 749 SUPERFAMILY Protein kinase-like (PK-like) 530 660 IPR011009 -
Trre16g04292 749 PIRSF SRK 1 660 IPR024171 GO:0004674
Trre16g04292 749 PIRSF SRK 661 749 IPR024171 GO:0004674
Trre16g04292 749 Pfam Protein tyrosine and serine/threonine kinase 551 659 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04292 Trre-Chr16 47855807 47858320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04292 405 660 Receptor kinase-like Gene Family AT4G23220 32.472 3.33e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre16g04292 PK_Tyr_Ser-Thr 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04292 - - cam:101496142 865.529