Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04284 ATGCAGGTAACTGTTCTGTTACCATGCGACTGTGCTATGTTGTTGCTTTTTCTCATAAATTACTTCGGCTGTCGTTCGCCAGAATTTGAGACCAGAAATACCAGATGCTGCCCAAGTTCTCTTGCAAACATAATGAGGAAATGCTGGGATGCCAGTCTTGATAAGCGGCCAGAGATGGACGAGGTTGTTTCCATGCTGGAGGCCATCGACACATCCAGAGGTGGAGGTATGATCCCTATTGATCAGCAGCAGGGTTGTTTTTGCTTTCGCAAGCATTGA 279 0.4659 MQVTVLLPCDCAMLLLFLINYFGCRSPEFETRNTRCCPSSLANIMRKCWDASLDKRPEMDEVVSMLEAIDTSRGGGMIPIDQQQGCFCFRKH 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04284 92 Gene3D Transferase(Phosphotransferase) domain 1 15 79 - -
Trre16g04284 92 SUPERFAMILY Protein kinase-like (PK-like) 25 68 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04284 Trre-Chr16 47828886 47829538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04284 35 89 MAP Kinase Kinase Kinase AT3G22750 69.091 1.02e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre16g04284 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04284 - - gmx:100807921 121.709