Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04271 ATGGCGTGGTCTGATTCAACTACTCACAAACAAACTCGTCCTTCTCAACCTCTTTACGTTCCTCAATTCCGTTCCAACAACAACATTCATCAACAACAACAACAACAACCACCTTACAACAATCGAACCCATTTTCCTTCATCCAATGATTCACCTCACTTGGCTTTCAATCGTTCAACTCCGCGACCACGTGGTCGAGGCGGTTACGGTTTCGCCCCGCCACGTCATTTCACTCGACCCGAACAACAACAACAACAGCCACGGAACTATGATCCTTCTTACCGGAACAACCGGTCACCGTTTGAAACAAACGCTGAACAAGAAAACGGCGAAAATGGTTCAAACGGCGTCGTTGCGAATTTCGAAGCGTATGATTCAATCCCTGTTGAAGCCACTGGAGAGAATGTTCCTCCACCGGTGAATGTCTTCGCTGAAACGGAACTTCATGATGATTTGAAGAACAACATTGAACGATGTAAGTATGTGAAACCTACTCCTGTTCAGCGTTACGCGATCCCCATTGCTGTTGCTGGTAGAGACCTTATGGCTTGTGCTCAGACTGGTTCCGGTAAAACGGCAGCGTTTTGTTTTCCGATCATATCTGGGATCATGAAGGGACGGTTGGCTTCTGAGTTTTCGGATATGCCACGTGGCGGTGGTTCCGATGTTGCTTTTCCCACTGCTCTCATCTTGTCTCCTACTAGGGAGTTATCATGCCAGATACATGCTGAAGCTACAAAGTTTGCATATCAAACAGGAGTGAAGATTGCGGTTTGTTATGGGGGTGCTCCTATTGGTCAGCAGTTAAGGGTTTTGGAACGAGGTGTTGATATTTTGGTTGCAACTCCTGGTCGTTTGGTTGATTTGATTGAGAGAGAAAGGATTTCTTTGAAGAAGATTAAGTATCTTGCTTTGGATGAGGCTGATCGGATGCTCGACATGGGTTTTGAGCATCAGATTCGTAATATTGTTCAGCAGATGCACATGCCTCCGCCGGGTGATAGACAGACATTGCTTTTCAGTGCTACATTTCCTGATAATATACAGAAACTTGCGTCTGATTTTCTATCAAACTATGTGTTCCTTGCTGTTGGAAGGGTTGGTTCAAGCACTGAACTGATTGTACAGAAAGTTGAATCTGTACAGGACATGGAGAAAAGAAATCGTCTTGTCGATCTTCTCCAACGCAATGTAGTTAATGGGAAGCTAGCTTTAACTCTTGTATTTGTTGAAACAAAGAAAGGAGCAGATGCTTTAGAAAACTGGTTGTGCAGAAGTGGTTTCCCAGCTATTGCAATACATGGTGATAAGGTTCAAATGGAGAGGGAACGAGCTTTGAGATCTTTCAAACGCGGTCTTACTCCAATAATGGTTGCGACTGATGTTGCTTCCCGAGGATTGGATATCCCTCACGTGGCTCATGTTATTAACTTTGACTTACCTAGAGACATAGATGACTATGTACATAGAATCGGTAGAACTGGCCGTGCTGGTCAAACTGGTTTAGCAACAGCTTTCTTCAGCAGCAAGAACATGCCTATTGCAAAGTCTCTTGTTGGTCTCTTACAGGAAGCAAAACAAGAAGTTCCTTCTTGGCTTGTCCAATGTTCTGAGAGTTCAGCACCAGGTGGACGCAGCAGCGTTGGATCTCAACGTTCGTCCTGGAGAGGCAATTACGGAGGACGTGATTTCCGAACTGCAACTGAACCTGGGATGGTGGAGAATTACAACTACAACAGTACCTACAGCAATGGCGACCATGCTGCCAACACATATACTGATACCTCTATAGACATCCAAAACTCTAACAACAACTGCTCTTTTGACAGCTCTAATACAGTGTTTGCCGGTGGTTACAGTTACTCTGATTCTTGTTTATTGGAAGGTAGTGATGGTCAAAATGGGCCATGTGGTTATGCATCTGTTGTACCCACTGGATGGGACTAA 1947 0.4474 MAWSDSTTHKQTRPSQPLYVPQFRSNNNIHQQQQQQPPYNNRTHFPSSNDSPHLAFNRSTPRPRGRGGYGFAPPRHFTRPEQQQQQPRNYDPSYRNNRSPFETNAEQENGENGSNGVVANFEAYDSIPVEATGENVPPPVNVFAETELHDDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKGRLASEFSDMPRGGGSDVAFPTALILSPTRELSCQIHAEATKFAYQTGVKIAVCYGGAPIGQQLRVLERGVDILVATPGRLVDLIERERISLKKIKYLALDEADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKVESVQDMEKRNRLVDLLQRNVVNGKLALTLVFVETKKGADALENWLCRSGFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQTGLATAFFSSKNMPIAKSLVGLLQEAKQEVPSWLVQCSESSAPGGRSSVGSQRSSWRGNYGGRDFRTATEPGMVENYNYNSTYSNGDHAANTYTDTSIDIQNSNNNCSFDSSNTVFAGGYSYSDSCLLEGSDGQNGPCGYASVVPTGWD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04271 648 SMART ultradead3 160 377 IPR014001 -
Trre16g04271 648 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 105 535 - -
Trre16g04271 648 CDD SF2_C_DEAD 374 507 - -
Trre16g04271 648 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 537 IPR001650 -
Trre16g04271 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 513 IPR027417 -
Trre16g04271 648 SMART helicmild6 417 498 IPR001650 -
Trre16g04271 648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 362 IPR014001 -
Trre16g04271 648 MobiDBLite consensus disorder prediction 1 56 - -
Trre16g04271 648 MobiDBLite consensus disorder prediction 1 117 - -
Trre16g04271 648 Gene3D - 364 540 IPR027417 -
Trre16g04271 648 FunFam ATP-dependent RNA helicase RhlB 365 541 - -
Trre16g04271 648 Gene3D - 95 363 IPR027417 -
Trre16g04271 648 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Trre16g04271 648 MobiDBLite consensus disorder prediction 78 116 - -
Trre16g04271 648 Pfam DEAD/DEAH box helicase 165 351 IPR011545 GO:0003676|GO:0005524
Trre16g04271 648 FunFam Probable ATP-dependent RNA helicase DDX4 102 364 - -
Trre16g04271 648 Pfam Helicase conserved C-terminal domain 386 498 IPR001650 -
Trre16g04271 648 CDD DEADc_DDX3_DDX4 143 368 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04271 Trre-Chr16 47716362 47719272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04271 139 518 Eukaryotic Initiation Factors Gene Family AT3G19760 32.021 1.20e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04271 K11594 - gmx:100817549 759.214