LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04262	ATGGACGAAGATTTGTTGAAGCGTAACACAGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGCAGAGTGTGAGTATAGGCACCATGAGATTGCGAGGCTTAACCCGAGGGATTGTTGGTACTGGTTATCGGGGAATTGTCTTAATCCGACTTGTGCTTTTAGACACCCTCCATTGGATGGGCACGCTGGAGTGCCATCTGAACCTGCGCAATCTTCGTTACCTGCAACTGCAAATAAGACAATGGTTCCGTGTTATTTCTTCTTCAATGGGTTTTGCAACAAAGGTAACAGATGCTCATTTTTGCACTGGACTGATACTAGCTTGCTAGCTGTAAAGCCTTTGAAGAATGACAATGTAAAGCCTCTGAAGAATGACAATGGAAGCATTAATGAACTCAACAACTTAGAAAACAAAACTTCAGGAAATAAAACAGTTGCATCAAAACCAAGCGAAACACATTTTGACCAACCTTTATCTGCTCCAAAAGCATTGTCTGATATTAAACTTCAGCCTAAGGAAGATCTTCAGCTACCACTACCCAAAAATGCTAAACAGAAAGATGATTGCTTGGAAGTATCTGCTTTTGACTATAAAGAAGCTCCCTCGAATCTGTCAGACTCTCCGTTACCAGATGATGACTATGCTCATAACAAGTCTCAGTCAAGTACTGAGCAGAGTTCAGAGGAGCAGGAAGATAGTCATGTAGAGCCTGAGGAGCGATGGGAATCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACCTGGGTTATGAGAATGATTCTGAATATTTGCCAGTGCTTGATATGGATGATCATGAACTGAATGAGCAATACTCGGGGTATGAACTTAAAAAAACAGATGAGTACGATACCATGTGCTCGGACGCTGATATTCTGTATGAACAGGGAACATGCGATGATTACAGATGTTTTGATAGAGATTTTACTAGTGCCAATGAAAGGAAAGTTTGTGGTTATTCCAGAGAAATGGTATTAGATTCTATATTTTCCAGGAAAAGGGTTCGGATGTCAGCTGCTGAGATGGCTGCTTATGACTCTGACTTAGATCTACGTGACCATCTGAGAAGACGCAGAGGGGTCAATGACCCCCCTGTCACAGGTTTCTTAAGAAGACATGAGTCATCTTCTTTGATGGTTCGAAACCGAGAAAGGCATCAATGGCAAGGCATTGGTCAGCGGCAAAACAAAAGATTAACATCACAATTTGGATTTAGTTCAATCAGAGAGGTTGAAGATCTTTCAATTGCTAACAAGCAGAGATTATTTAGGCCTTCCCAACAAAATAGGCCAAGAAGTCATTATAGAGAAAAACCAGCTAAACGGCCATTTCATTCATCTAAAAAAAAAGTATCCAGGAAACCAGTTGCGAAGCAACGGAACTTTATCCAGGAATCTGGTACATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGATGAAGGCTGGTAAAAGTTCACACTGTGAAAGCTCCTCAGCTGGTTTTCAGAATCCCAAACCTCTGCACGAGATTCTTAAAGACAGAAGGACCGTGGATTGA	1590	0.417	MDEDLLKRNTDCVYFLASPLTCKKGAECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGHAGVPSEPAQSSLPATANKTMVPCYFFFNGFCNKGNRCSFLHWTDTSLLAVKPLKNDNVKPLKNDNGSINELNNLENKTSGNKTVASKPSETHFDQPLSAPKALSDIKLQPKEDLQLPLPKNAKQKDDCLEVSAFDYKEAPSNLSDSPLPDDDYAHNKSQSSTEQSSEEQEDSHVEPEERWESSPGFDVLVHDESGNLGYENDSEYLPVLDMDDHELNEQYSGYELKKTDEYDTMCSDADILYEQGTCDDYRCFDRDFTSANERKVCGYSREMVLDSIFSRKRVRMSAAEMAAYDSDLDLRDHLRRRRGVNDPPVTGFLRRHESSSLMVRNRERHQWQGIGQRQNKRLTSQFGFSSIREVEDLSIANKQRLFRPSQQNRPRSHYREKPAKRPFHSSKKKVSRKPVAKQRNFIQESGTFSGPKTLAEIKEEKMKAGKSSHCESSSAGFQNPKPLHEILKDRRTVD	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04262	529	MobiDBLite	consensus disorder prediction	433	529	-	-
	Trre16g04262	529	MobiDBLite	consensus disorder prediction	205	250	-	-
	Trre16g04262	529	ProSiteProfiles	Zinc finger C3H1-type profile.	6	35	IPR000571	GO:0046872
	Trre16g04262	529	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	527	-	-
	Trre16g04262	529	FunFam	Zinc finger CCCH domain-containing protein 17	1	63	-	-
	Trre16g04262	529	SUPERFAMILY	CCCH zinc finger	83	107	IPR036855	GO:0046872
	Trre16g04262	529	MobiDBLite	consensus disorder prediction	449	470	-	-
	Trre16g04262	529	Pfam	Zinc-finger containing family	7	63	IPR041686	-
	Trre16g04262	529	ProSiteProfiles	Zinc finger C3H1-type profile.	37	63	IPR000571	GO:0046872
	Trre16g04262	529	SMART	c3hfinal6	39	62	IPR000571	GO:0046872
	Trre16g04262	529	SMART	c3hfinal6	7	34	IPR000571	GO:0046872
	Trre16g04262	529	SMART	c3hfinal6	83	109	IPR000571	GO:0046872
	Trre16g04262	529	MobiDBLite	consensus disorder prediction	230	250	-	-
	Trre16g04262	529	MobiDBLite	consensus disorder prediction	126	159	-	-
	Trre16g04262	529	Gene3D	-	75	147	-	-
	Trre16g04262	529	Gene3D	-	3	63	-	-
	Trre16g04262	529	ProSiteProfiles	Zinc finger C3H1-type profile.	83	110	IPR000571	GO:0046872
	Trre16g04262	529	MobiDBLite	consensus disorder prediction	122	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04262	Trre-Chr16	47663118	47665733	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Trre16g04262		zf-CCCH_3	1.8e-11	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04262	-		-	aprc:113847503	719.153