Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04260 ATGAATATCAACGTTAATCCAAATGGTAGTGTTGATTTCAAGACAATTACCGAAGCTATCGACAACATTCCAGCACCCAACACCAGAAGAGTAGTTGTTTTCATTGCGCCTGGTCTTTACAGAACCTGGCATCCTCTCGCCTTGGAACCAACAATGATCAAGCCGTTGCTCTTCGCACCTCTAGAAACAAAAGTGCATAATACAATTGTGGCTTATATGGATTTCAAGACACGCTATATGATCACAAAGGCTTCCACTACTTTATAG 267 0.412 MNINVNPNGSVDFKTITEAIDNIPAPNTRRVVVFIAPGLYRTWHPLALEPTMIKPLLFAPLETKVHNTIVAYMDFKTRYMITKASTTL 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04260 88 Gene3D - 1 86 IPR012334 -
Trre16g04260 88 SUPERFAMILY Pectin lyase-like 2 42 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04260 Trre-Chr16 47640608 47641583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04260 3 41 Carbohydrate Esterase AT1G69940 56.410 4.03e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04260 K01051 - tpra:123885915 72.0182