Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04257 ATGGCTTATCAACACCACATTCCAACCTCTAGGATGTCACCACCCCGTTTCGCCACAAACAGTGATGCCATTGAGGTGAGGCCTCAATTCCCATTGATCAATGACAGCTCTGAGCAACATTCCTCCAAGAGGGCAAAAATGATCGGTAACAATCGTTCCGATGCATTGCCATGCCCTCCTCCTAGGATGATGCAGCCTCCACCTCAATTGAACAGAGGAACTGGCCACTTTTTCTACAAGACCCGCGAATGTACCAAGTTCAGTTTCGGCAGTTGTAGGAATGGTGACAATTGCAACTTTGCTCATGGGAAGGAAGAGCTAAGGCAGCCACCACCAAATTGGCAGGAGCTTGTTGGTCTGCGCAACGAGCGCAAGGAGGAACGGATGCAGGTGGGGAACTGGGATGATGATCAAAGAATCATCCAGAAGATGAAGCTGTGTAAGAAGTTTTACAATGGTGAGCAATGTCCTTACGGTGAGAACTGTAGTTTTCTCCATGAAGATCCTGCTAAGTTTAGGGCTGATTCTTGGAAATCAAGAGAGTGTTCTGCAATAAGCATTGGGACTATTGGTTCCCCAAAGTCTTTTGGGGATGGTTCTGATAACTTGGAAGGCAATAGTGGTGTGACCAAGCAACCAAAGGGCACCTTTTGGAAGACTAAGCTGTGCACCAAGTGGCAGAATACTGGAAGCTGTTCCTTTGGAAAGGACTGCCACTTTGCTCATGGAGAAGCAGATTTACAAGCTCCTGGTGGAGGCATTGAAGCTGAAGCTGCAGTTGCCATAGCAAATTCTACAAAAGCTACCGTTCCAGCTTCAGCAAATGCCATATCAGTTCCTGCCAATGTTGAACCTGCTGCCCTCCCAGAAAGTGTACCTATGGAAATGGATGAGAAAGGTAAGAAGCCTGTGGAAATGGATGAGAAAGCTAAGAAGATCTTGTCAAGAATCGGATCAAAGAAAAAGAAGCTGTTTAACATGTATGCTGACTGGATTAATGATATAGGTCCTATTCTTCCCGACTCTCCTCCAAGTCCAATGGAAAGTTGA 1050 0.4629 MAYQHHIPTSRMSPPRFATNSDAIEVRPQFPLINDSSEQHSSKRAKMIGNNRSDALPCPPPRMMQPPPQLNRGTGHFFYKTRECTKFSFGSCRNGDNCNFAHGKEELRQPPPNWQELVGLRNERKEERMQVGNWDDDQRIIQKMKLCKKFYNGEQCPYGENCSFLHEDPAKFRADSWKSRECSAISIGTIGSPKSFGDGSDNLEGNSGVTKQPKGTFWKTKLCTKWQNTGSCSFGKDCHFAHGEADLQAPGGGIEAEAAVAIANSTKATVPASANAISVPANVEPAALPESVPMEMDEKGKKPVEMDEKAKKILSRIGSKKKKLFNMYADWINDIGPILPDSPPSPMES 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04257 349 Gene3D - 210 249 - -
Trre16g04257 349 Gene3D - 73 109 - -
Trre16g04257 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 170 IPR045877 GO:0003729
Trre16g04257 349 Gene3D - 134 191 - -
Trre16g04257 349 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Trre16g04257 349 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Trre16g04257 349 SMART c3hfinal6 78 104 IPR000571 GO:0046872
Trre16g04257 349 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Trre16g04257 349 SUPERFAMILY CCCH zinc finger 216 248 IPR036855 GO:0046872
Trre16g04257 349 FunFam Zinc finger CCCH domain-containing protein 39 138 170 - -
Trre16g04257 349 FunFam Zinc finger CCCH domain-containing protein 212 249 - -
Trre16g04257 349 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Trre16g04257 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 244 IPR000571 GO:0046872
Trre16g04257 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 79 104 IPR000571 GO:0046872
Trre16g04257 349 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Trre16g04257 349 Pfam CCCH-type zinc finger 145 166 IPR041367 -
Trre16g04257 349 SUPERFAMILY CCCH zinc finger 76 109 IPR036855 GO:0046872
Trre16g04257 349 SUPERFAMILY CCCH zinc finger 140 168 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04257 Trre-Chr16 47625285 47628279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04257 219 248 C3H Transcription Factor Family AT1G68200 56.667 4.47e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g04257 zf-CCCH 1.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04257 - - tpra:123881739 580.867