Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04250 ATGCTTCCTCTACTTCGTTTTTTCTACTGCAGAAGAATCCATCGTTGGTTTTCTGAGCTTGAGGAGAATGAACGGATCAACTTTAATATGGTTCGCATTGCAAAGATGATGTGGGTTTGTTATTTGGTTTGCCACTATGGTGGATGTGTTTTCTACCTTATGGCGACATTTCATGCTCATGTTGAGAACACTTGGTTTTCCCTAGTTGATCTTAACTTCGTCACGCTGGGATTAATTAACAAATATGTGACTTCTATGTATTATGCTGTGATATCTTTCACCACTGTTGGGTATGGCGATTTGCATCCGGTTTATATCGATGAGAAAGTATTTTCCGTGATCTTTCTTTTAGCCGACTTTGGACTTGTAGCATATGTCGCAACTACTATCATTTATTTAGTTGCTCCTGACGTTGGTCCACTAGGAAAATATAGAGCACGTCGAGCGCGTGTATTAGGATTTTGTCGACAAAATGGATTACCTGATGAGCTTTGTATTGAGGTGTCATCTCACCTTAAACAAGAGTACTTATCACAATCACATTCATTTGAAGAAAGTAGTATTATGGAATCACTGCCCACAACAATTAAAAAAAATATTTTAATTGCTTTGTCTAATGCGGTGAAAAATAACATCTTGTTTAATCATTTGACAAATTCTACACAATTTCAACTGATACAAGCGATGGAGCCCGTATTCTTTCCGGCTAGTACAAGTATAATCCTAGAGAATGAAGCACCGACGTTTTTGTATTTTGTTGTAAGAGGTTTTGTGGACTTAATACCTCCTGGGAATTTTGAAAATGAAGATACTGTCATAATAACGGTCGGACCCGGAGAAGTTTTCGGTGAAACTTGCCTATTTTTCAATACACCTCAAGTTTTTGCCGCTATAGCTAGAGAATCGAGTCACCTTCTCATGTTGGATCGAGTGAAACTCTTGAACATTCTGGAGGGCTGTGTGAACGATACATCTCGGATGATAAGTGACTACATTCAGGCTTTAGAAGCGAACAACAATCCATACATGAATAGAGTTCTGTTGGATTTTGAAAAGAGAGCAGAAATTGGTAATATTGATCTTCCAGTAAGCTTGTGGTTTGCGCTCAATAGAAGATATTATCGGTTATTTGATATACTGGTTGAAAAATATCAAGATCCAAATGGGTGTGACATAAAAGGGCGGACAGCTATGCACCTAGCAGCATCAAGGGGAGAAGTTGAGAAGGTTAACATGCTACTTAGAATTGGGGCAGATCCAAATTTAAAAGATTTGGCCGGCATTGTCCCACTTTGGAACGCCATGCTTGGTAGGCATGCAAATGTCGTACAAGCCTTGGAATACTATGGATGTACTTTAAAAAGTTGTCATCTTGGAAAGTATGCATATATTGTGGCTTCACGAGGCAACATGGATTTGCTACAAATTATTGGCCAGGAAAATGATCAATTTCTTTCTGTCCCAAATTTCCGCGGGGAAACAGCATTACATGCGGCTGTGTATCTAGGCGACTTACCTATGATTCAATATCTCGTGGAAATGGGTGTGCAGATTATTCGAAATGACGATTATGGTCATAGCCCATTAAGCCTGGCAGAGATACATGGTGACGAAGAAATTCAAAACTATTTGGAGGAAAAAGCAATCGGCGTAGCAGAATTTAAACATGGGATAAATGTGACAGGGTCGGTAACTATAGGTGCAGACTGTATTCCTTGGTTCTCATCGATTTGGTGGAAGGATATTAGCTCTATTGGAGCCAATCTTGACATAAATTGGTTTTCTCAAGGAGTGGTCAAGCGTATTGGGTGCGGGGATCATACGAAATTCTGGAGACATGTATGGGTTGGGTCTGTTACACTTCAGGAGAGGTTCCCTTGGCTGTTTTCTTTATCTATGCAGAAGAAGAGTTCTGTGGCGGAGTTGCGAGTGGTAGAGATGGGGACTGTGAATTGGAATTTGCTTTGGCGTCGAAGATTGTTCGTGTGGGAAGAAAACTTAGTGGCTGATCTTTTGGAGGCAATTTCCACGGTGGTGCTGTCGGATGATCGCGATAGATGGGGCTGGTCTTTTAATGATGGTGGAGAGTTTACGGTTAAATCAACTTATTGGGTCGTTCTTAAACTGTTTGTGCCGTTAGACCCGATAGTTTGGGCATTGTGGAAGATGCGTAACTCCGTAATTTTCGAGAATGCGGTTGCTCAATTTGGGTCTGTGGTGGATGATGTTAAATTCTGGGCGTGGAAGTGGTGGTTAAGCTTTGTGAAGCCGTACGAGATTTGTCTCCTATACGAGTGGATTTCTGAACCAATTCTATGTCTTGATAGAAGCTGCTGA 2337 0.4078 MLPLLRFFYCRRIHRWFSELEENERINFNMVRIAKMMWVCYLVCHYGGCVFYLMATFHAHVENTWFSLVDLNFVTLGLINKYVTSMYYAVISFTTVGYGDLHPVYIDEKVFSVIFLLADFGLVAYVATTIIYLVAPDVGPLGKYRARRARVLGFCRQNGLPDELCIEVSSHLKQEYLSQSHSFEESSIMESLPTTIKKNILIALSNAVKNNILFNHLTNSTQFQLIQAMEPVFFPASTSIILENEAPTFLYFVVRGFVDLIPPGNFENEDTVIITVGPGEVFGETCLFFNTPQVFAAIARESSHLLMLDRVKLLNILEGCVNDTSRMISDYIQALEANNNPYMNRVLLDFEKRAEIGNIDLPVSLWFALNRRYYRLFDILVEKYQDPNGCDIKGRTAMHLAASRGEVEKVNMLLRIGADPNLKDLAGIVPLWNAMLGRHANVVQALEYYGCTLKSCHLGKYAYIVASRGNMDLLQIIGQENDQFLSVPNFRGETALHAAVYLGDLPMIQYLVEMGVQIIRNDDYGHSPLSLAEIHGDEEIQNYLEEKAIGVAEFKHGINVTGSVTIGADCIPWFSSIWWKDISSIGANLDINWFSQGVVKRIGCGDHTKFWRHVWVGSVTLQERFPWLFSLSMQKKSSVAELRVVEMGTVNWNLLWRRRLFVWEENLVADLLEAISTVVLSDDRDRWGWSFNDGGEFTVKSTYWVVLKLFVPLDPIVWALWKMRNSVIFENAVAQFGSVVDDVKFWAWKWWLSFVKPYEICLLYEWISEPILCLDRSC 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04250 778 CDD CAP_ED 213 328 IPR000595 -
Trre16g04250 778 Pfam Ankyrin repeats (3 copies) 467 546 IPR002110 GO:0005515
Trre16g04250 778 Gene3D Jelly Rolls 178 341 IPR014710 -
Trre16g04250 778 ProSiteProfiles Ankyrin repeat profile. 393 425 IPR002110 GO:0005515
Trre16g04250 778 Gene3D - 362 546 IPR036770 -
Trre16g04250 778 SUPERFAMILY Voltage-gated potassium channels 5 164 - -
Trre16g04250 778 SUPERFAMILY Ankyrin repeat 337 546 IPR036770 -
Trre16g04250 778 PANTHER POTASSIUM CHANNEL AKT1 2 554 IPR045319 GO:0005249|GO:0006813
Trre16g04250 778 ProSiteProfiles Ankyrin repeat region circular profile. 491 518 - -
Trre16g04250 778 SMART cnmp_10 213 332 IPR000595 -
Trre16g04250 778 ProSiteProfiles cAMP/cGMP binding motif profile. 213 334 IPR000595 -
Trre16g04250 778 SMART ANK_2a 491 521 IPR002110 GO:0005515
Trre16g04250 778 SMART ANK_2a 426 455 IPR002110 GO:0005515
Trre16g04250 778 SMART ANK_2a 524 553 IPR002110 GO:0005515
Trre16g04250 778 SMART ANK_2a 393 422 IPR002110 GO:0005515
Trre16g04250 778 Pfam Ankyrin repeat 394 421 IPR002110 GO:0005515
Trre16g04250 778 ProSiteProfiles Ankyrin repeat region circular profile. 393 424 - -
Trre16g04250 778 SUPERFAMILY cAMP-binding domain-like 143 327 IPR018490 -
Trre16g04250 778 Gene3D - 1 135 - -
Trre16g04250 778 Pfam Ion channel 80 131 IPR013099 -
Trre16g04250 778 ProSiteProfiles Ankyrin repeat profile. 491 523 IPR002110 GO:0005515
Trre16g04250 778 Pfam Cyclic nucleotide-binding domain 232 318 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04250 Trre-Chr16 47579795 47585193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04250 4 566 Ion Channels AT2G26650 33.451 3.14e-101 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04250 K21867 - egt:105975303 348.977