Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04249 ATGTTGTCAAGGATTTGCATGAAGAAGCCTGATGTTCTTGGAAACGATGACACGAGAGCATGGTTCACAAAGCTTGAGAGGCACCATATGGGGCAATTCTCTACGGCTGCTTATCAAGCAAACTCTACCATGGAAGATTACAGTCAAGTTGAAGTGAGTGACAATAGTCTTTTTGTCGGAATATACGATGGACATGACGGCACAAACGCAGCAAAGTTCATATCAAATCACATTTGTCAAGAACTATTAAGGCTGATTCGTGAAAACTATAATGTGATGGATGACAAGCTTCTTCGTGAAGCTGTAGCTGCAACTGAACAGAAGTTCACCCATGTTGTAAATGACAATAAACACACTAATCCAGACATAAAGTATGTGGGTTCTTGCTGTCTGATCACTCTTATATGGAAAGGGGTGCTATATATAGCCAATCTTGGGGATTCTCGAGTTGTGCTTGGCACGACTTACACCGACCTGCCGTTTAGACAAGGGTTACAAGCCCAACAGTTAACTAGAGATCGCAATCGTGAGGATCATCATATTAGAGTAGGATTGCAACAAATATATCCAGATGATACTATTCTCATGCCCGATGATTATGGATGGAGGGCTAAAGACTTATCCAAGATTACAAGTACTATTGGGGATGTCTACCTAAAAACTTATTTGCCAATCGTTAGAGACGTGTCTTTACCACCTTATCGATATGCTGTAACATCTAAACCAAGGATAAATTCAAGAATATTAAGAGATGGTGATGAATTCTTTATTCTTGCATCTCGTGGATTTTGGGAAGTCATGACAAATAACGAGGCCGTTTCAATTGTTAAGAGAAATTCCCGACGTGGCATTGCAAAAATACTTTTAAGGAAGGCATTGGAAAAGGTGGCAGTAAAAGAGAAAATAAGTTATAAAGACATTGTACGTTCTGCTGATAGAAAGAAATTTCATGATGATATCACAATAATAGTAGTTTTTTTAGAACTATGCAGGCCTCTATGGAAGAGAAATGTACCAAAACTCTCATACAAAACCCCCTCCCATACATAG 1050 0.3905 MLSRICMKKPDVLGNDDTRAWFTKLERHHMGQFSTAAYQANSTMEDYSQVEVSDNSLFVGIYDGHDGTNAAKFISNHICQELLRLIRENYNVMDDKLLREAVAATEQKFTHVVNDNKHTNPDIKYVGSCCLITLIWKGVLYIANLGDSRVVLGTTYTDLPFRQGLQAQQLTRDRNREDHHIRVGLQQIYPDDTILMPDDYGWRAKDLSKITSTIGDVYLKTYLPIVRDVSLPPYRYAVTSKPRINSRILRDGDEFFILASRGFWEVMTNNEAVSIVKRNSRRGIAKILLRKALEKVAVKEKISYKDIVRSADRKKFHDDITIIVVFLELCRPLWKRNVPKLSYKTPSHT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04249 349 CDD PP2Cc 39 327 IPR001932 -
Trre16g04249 349 ProSiteProfiles PPM-type phosphatase domain profile. 32 327 IPR001932 -
Trre16g04249 349 Gene3D - 14 329 IPR036457 -
Trre16g04249 349 SMART PP2C_4 27 325 IPR001932 -
Trre16g04249 349 Pfam Protein phosphatase 2C 214 295 IPR001932 -
Trre16g04249 349 Pfam Protein phosphatase 2C 51 173 IPR001932 -
Trre16g04249 349 PANTHER PROTEIN PHOSPHATASE 30 325 IPR015655 GO:0004722|GO:0006470
Trre16g04249 349 SUPERFAMILY PP2C-like 27 328 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04249 Trre-Chr16 47561885 47563339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04249 21 349 PP2C-type Phosphatase Gene Family AT5G06750 41.056 1.83e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04249 K01102 - ming:122088263 259.225