LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04244	ATGAACACCATCAACATTCCTTACAGAGATGAACCAGATTACGACAGCAGCTCCTCCTCCATCACCGTACCGGAATCAACCCGAAGCTGGATGAGCAACCTCAGCTTCGGAAGCCGCCGTCGCCGAAGCTCCGTCTCCGTTTCTTCCACCACCACATACACCTCTTCAATATTAGGTTCCAACGCCAAACCTCACAAAGCAAACCAAGTTGCATGGGAAGCCATGAGCAGACTCCGACTCGACAAAGGTCGAGTCGGCCTCGACCACTTCCGACTCTTAAAAAGACTCGGAAGTGGTGATATAGGGAATGTATACCTTTGTCAGATAAGAAACCCTGTGGTAGGTTTACCACAGTGTTTTTATGCTATGAAAGTTATTGATAGAGAAGCACTTGCTATAAGAAAAAAGCTTCAAAGAGCAGAAATGGAGAAAGAGATTTTGGGTATGCTTGATCATCCTTTTTTGCCTACTTTGTACACTGAGTTTGATGCTTCTCATTACTCTTGTTTGGTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTTCTCGCCAACGCCAACCTGGGAAGCGCTTTTCCTTATCATCCGCTAAGTTTTATGCAGCTGAGACACTATTGGCACTAGAATATCTACACATGATGGGAATAGTATACAGAGATTTAAAGCCAGAGAATGTTTTAGTAAGAGAAGATGGACACATAATGCTTTCAGATTTCGATCTTTCACTTAAATGTGACGTAGTTCCAAAGCTATTAAGAAACAAAACAAGATTAGAAAGAAGCATCAAAACTACAACAAGAAAATCTTCAACACCTTCTTGTATTTCCCCCATGCAACCAGTTTTGTCTTGTTTCTTATCATCATCAACAAAGAAAAAGAAAACAACACTTGAAACAGTTATAAGAGAAAATGTTCAAGAAGAGTTTGAGGTTGATCTTGATCCTGATCCTGATTTTGTAGCTGAACCAATTGATGCAAGATCAAAATCATTTGTTGGGACACATGAATATTTAGCACCAGAAGTTATTTTAGGACAAGGTCATGGAAGTGCTGTAGATTGGTGGACATTTGGTGTTTTTTTGTATGAAATGTTATATGGAAGAACACCATTTAAAGGTGAAAACAATGAGAAAACATTGGTCAACATTTTAAAACAACCTTTGACTTTTCCTAGGATTGGTGTTAGTAGTAGTAATGAGTTTGAAGAGATGGTCAAAGTTCAAGATCTTATAAGTAAATTGTTGGTGAAGAATCCTAATAAGAGAATTGGAAGTTGTTTGGGTTCAGTTGAGATTAAAAGACATGAATTTTTTAAAGGTGTGAATTGGGCTTTGATTAGATCTGTTAGACCCCCTGAGGTTCCTAGTGATAAGAATAAGATTAGGAATAGGGTTTTGGTACCTAAGTTAAGCAAGAAAGAAAGAGATCAACCATTTCAGCTTAAACGTCAATTTGATTACTTCTGA	1467	0.3858	MNTINIPYRDEPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSVSSTTTYTSSILGSNAKPHKANQVAWEAMSRLRLDKGRVGLDHFRLLKRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVIDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYASRQRQPGKRFSLSSAKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRNKTRLERSIKTTTRKSSTPSCISPMQPVLSCFLSSSTKKKKTTLETVIRENVQEEFEVDLDPDPDFVAEPIDARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIGVSSSNEFEEMVKVQDLISKLLVKNPNKRIGSCLGSVEIKRHEFFKGVNWALIRSVRPPEVPSDKNKIRNRVLVPKLSKKERDQPFQLKRQFDYF	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04244	488	FunFam	serine/threonine-protein kinase D6PK-like	326	456	-	-
	Trre16g04244	488	MobiDBLite	consensus disorder prediction	1	23	-	-
	Trre16g04244	488	SUPERFAMILY	Protein kinase-like (PK-like)	72	456	IPR011009	-
	Trre16g04244	488	ProSiteProfiles	Protein kinase domain profile.	90	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04244	488	SMART	serkin_6	90	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04244	488	PANTHER	FLIPPASE KINASE 1-RELATED	38	460	-	-
	Trre16g04244	488	Gene3D	Transferase(Phosphotransferase) domain 1	175	244	-	-
	Trre16g04244	488	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	216	228	IPR008271	GO:0004672\|GO:0006468
	Trre16g04244	488	FunFam	protein kinase PINOID 2	88	174	-	-
	Trre16g04244	488	CDD	STKc_phototropin_like	88	455	-	-
	Trre16g04244	488	FunFam	protein kinase PINOID	175	243	-	-
	Trre16g04244	488	Pfam	Protein kinase domain	91	245	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04244	488	Pfam	Protein kinase domain	328	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g04244	488	Coils	Coil	123	143	-	-
	Trre16g04244	488	Gene3D	Phosphorylase Kinase; domain 1	88	174	-	-
	Trre16g04244	488	Gene3D	Transferase(Phosphotransferase) domain 1	325	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04244	Trre-Chr16	47503750	47505884	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g04244	1	488	AGC Kinase Gene Family	AT2G26700	59.218	0.0	596

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre16g04244		Pkinase	2.4e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04244	K08286		-	gmx:100777988	755.362