Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04238 ATGGAAGACAGAAAAGTACACACGATTGCTGTTATATCAGTGATATCCTTAATCATTGTAATCATCATTTGTCGTGTTTCCTTAAAACTCTCAAAAGCTTTCTTCTTAATCTGCGGCGCATCAATCGCAATAATTCTCGCTGTCTTTTCATGTTTACTTATAAGACAACGTTACAACAACAGAAGAAAAGTGTTGGAATCACAGTTAAAATCAGAAGGTCGTGAGCTTCGAATCGAGTACAGTTTCTTAAGAAAAATTGCAGGGGTACCGACAAAATATCGATACAAAGAGCTCGAAGAAGCAACCGATGATTTTCGTGCAGTAATCGGTAAAGGGTCATCAGGTTCAGTTTTCAAAGGCATTTTGAATGATGGAACTTCAGTTGCAGTGAAAAGAATTCTTGGTGAAGAAAGAGGTGAGAGAGAATTTAGATCAGAAGTTTCAGCTATTGCTAGTGTTCAACATGTTAATCTTGTTAGACTTTTTGGACGTGTGAGTGTGGAAGAGCCACCAGGTACTAGAATGATTCTTGTTGATATGTTAGCTGATGATGAAGATCCTACAGATCATAATAATTTAGCTAGGTTATTGACTCCTGTGTCTAGTAATGTTGAATGTACCTCTAATTACTCTTTAGGATCCACTATTTTCTCTGGTAGATAA 663 0.368 MEDRKVHTIAVISVISLIIVIIICRVSLKLSKAFFLICGASIAIILAVFSCLLIRQRYNNRRKVLESQLKSEGRELRIEYSFLRKIAGVPTKYRYKELEEATDDFRAVIGKGSSGSVFKGILNDGTSVAVKRILGEERGEREFRSEVSAIASVQHVNLVRLFGRVSVEEPPGTRMILVDMLADDEDPTDHNNLARLLTPVSSNVECTSNYSLGSTIFSGR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04238 220 SUPERFAMILY Protein kinase-like (PK-like) 85 177 IPR011009 -
Trre16g04238 220 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Trre16g04238 220 Pfam Protein kinase domain 107 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04238 220 Gene3D Phosphorylase Kinase; domain 1 64 178 - -
Trre16g04238 220 FunFam Putative receptor-like protein kinase 70 179 - -
Trre16g04238 220 Coils Coil 55 75 - -
Trre16g04238 220 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 193 - -
Trre16g04238 220 ProSiteProfiles Protein kinase domain profile. 103 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04238 Trre-Chr16 47419340 47420677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04238 1 183 Receptor kinase-like Gene Family AT5G20050 62.842 3.84e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre16g04238 Pkinase 2.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04238 - - gmx:100779485 255.373