Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04228 ATGGTGATTCCTATGACTATGTGTGGTCAAGAAGAACTTGAATTATCAAGAGATGGCAGTCAATATAGTCTCTCCACCGGAATATTACCTTCTCTCGGTGCCAGAAGTAACCGGAGAGTTAAATTCCGATCTTTCATTTTATCTCCTTATGACCGCCGTTACAGGGCATGGGAAACTTTTCTGGTTACACTGGTTGTGTATACTGCTTGGGTATCTCCATTTGAATTTGGATTCCTTAAGAAACCACAAAAACCACTTTCTGTTTCTGATAATATTGTCAATGGATTCTTTGCTATAGATATATTTCTCACATTCTTTGTGGCTTACTTAGACAAAACTACCTATTTGTTCGTAGATGAACCAAAACAGATTGCTTGGAAATATGTTAGAACTTGGTTTGCATTTGATCTTATCTCCATCATTCCTTCGGAGCTTGTTACAGGACGGTTATCTTATGGCCTATTCAACATGCTTCGACTTTGGCGTCTTCGAAGAGTTAGCTCTTTGTTTTCTCGGCTTGAGAAGGACCGAAACTATAACTATTTCTGGGTTCGGTGCGCAAAGCTTATTTGTGTTACCCTTTTCGCTGTGCATTGTGCTGGATGCTTTTATTATCTTCTTGCTGCGCGTTATCATGATCCCCAAAAGACGTGGATTGGCCAAACAATGGCCAATTTCCTTCATCAGTCCTTATGGACAAGATATGTGACGACTATTTACTGGTCGATCACTACTTTAACAACAGTTGGTTATGGAGATTTGCATCCGGTGAATGAAAGGGAGATGATCTTTGTCATATTTTATATGCTCTTTAATCTCGGATTAACAGCATATCTGATCGGTAACATGACTAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCGAGTTTTGCTCAAAGGAACCAATTACCCCCTCGTTTACAAGATCAAATGCTTGCGCACTTGTGTTTGAAGTTTAGAACAGACTCAGAGGGGTTGCAGCAACAAGAGACACTCGATTCGCTTCCTAAAGCCATTAGATCAAGTATTTCACATTATCTTTTCTATTCTTTGATGGATAAGGTCTACTTATTCAAAGGAGTTTCAAATGATTTGCTCTTTCAATTGGTATCGGAGATGAAGCCGGAGTATTTTCCACCTAAAGAAGATGTTATCTTACAAAATGAAGCTCCAACTGATTTTTACATTCTAGTCACTGGTGCTGTGGACTTAATAGTTCTCAAAGGCGGGCTTGAACAGGTAGTCGGAGAGGCGAAAACCGGAGAACTTTGTGGCGAGATTGGAGTCCTTTGCTATAAGCCGCAACATTTTACTGTTCGAACCAAGCGATTAAGTCAACTGTTGAGGCTGAACCGTACCACTTTCTTGAATATTGTTCAGGCTAATGTCGGGGATGGAACAATAATAATGAATAATCTTCTTCAGCATTTGAAAGATCTTAATGATCCAATCATGGAGGGAGTTTTAGTAGAGACTGAGAACATGTTAGCTCGCGGTCGAATGGACCTACCAGTTAGTCTATGCTTTGCAGCAGCAAGAGGAGATGATTTATTGTTACAACAATTGTTGAAAAGGGGTTTGGATCCAAATGAATCTGACAACAATGGAAGAACAGCTTTGCATATAGCAGCATGTAAAGGAAAAGAAAATTGTGTTTTACTTCTGTTGGATTATGGGGCGAATCCGAATATTAGAGATTCGGGTGGGAATGTAGCACTGTGGGAAGCTATACTTGGTGAACATGAATCAGTGATCAAAATTTTGGTAGAAAATGGTGCTACATTGCAAAGTGGTGATATTGGTCAATATGCATGCAGTGCAGTTGAACAAAACAATCTGAATTTGTTGCAAGCAATTATGCGTTACGGAGGAGATATCACACTTCCAAATACTAGCGTTGGAACTACGGCTTTACACGTGGCAGTGTCCGACGACAATACCGAAATTGTCAAATTTCTATTAGATCATGGAGCTAACATTGACAAACAAGACAAATATGGTTGGAGTCCAAGAGCTTTAGCTGATCAACAAGGACATGCCGAAATCAAAGCCATTTTTGAAGACAAAGGAGAACAACCTAAGATTCAATCTTTTGTTTCTATGCCTATTCCTGAGAGGCAGGGTAGTGGTACTACTAAGGTGAGGTACCTTGGTAGATTTACAAGTGAGCCAACAATGCCTATAGTTCAAGATGGATCATTTCATGGAAACGATAATGGTTCGTGGATGCAACATCGTCCGAGGCGTAGGAATAATAACTTTCATAACTCACTCTTCGGGATAATGTCGGCGGCACACAAAGGAGAAAATGATCAGTTTTTCAATGTTAAGATTAATAACAATGCAAGGAATGGTATGAAGAATATTGCGCGTCCGACTAGAGTAATCATTAGTTGTCCTGAAAAAGGTGAGATTGCTGGGAAGCTTGTATTGCTACCTGAAAGTTTTAAAGAGTTACTTGAGATTGGAGCTAAGAAATTTGGTATAGTTGTTACTAAGGTTGTTTGCAAAGATGGAGCTGAAATTGATGATATTGAGGTCATAAGAGATGGTGATCATCTTGTTTTTGTTGGTGATGGTGGGGAGCTAGATTCTAATTGTCCAACAACACACTCTAATGGTGTCATTCCATAG 2664 0.396 MVIPMTMCGQEELELSRDGSQYSLSTGILPSLGARSNRRVKFRSFILSPYDRRYRAWETFLVTLVVYTAWVSPFEFGFLKKPQKPLSVSDNIVNGFFAIDIFLTFFVAYLDKTTYLFVDEPKQIAWKYVRTWFAFDLISIIPSELVTGRLSYGLFNMLRLWRLRRVSSLFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPQKTWIGQTMANFLHQSLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLIVLKGGLEQVVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLNDPIMEGVLVETENMLARGRMDLPVSLCFAAARGDDLLLQQLLKRGLDPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNIRDSGGNVALWEAILGEHESVIKILVENGATLQSGDIGQYACSAVEQNNLNLLQAIMRYGGDITLPNTSVGTTALHVAVSDDNTEIVKFLLDHGANIDKQDKYGWSPRALADQQGHAEIKAIFEDKGEQPKIQSFVSMPIPERQGSGTTKVRYLGRFTSEPTMPIVQDGSFHGNDNGSWMQHRPRRRNNNFHNSLFGIMSAAHKGENDQFFNVKINNNARNGMKNIARPTRVIISCPEKGEIAGKLVLLPESFKELLEIGAKKFGIVVTKVVCKDGAEIDDIEVIRDGDHLVFVGDGGELDSNCPTTHSNGVIP 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04228 887 Pfam Cyclic nucleotide-binding domain 386 471 IPR000595 -
Trre16g04228 887 ProSiteProfiles cAMP/cGMP binding motif profile. 367 469 IPR000595 -
Trre16g04228 887 SMART ANK_2a 643 672 IPR002110 GO:0005515
Trre16g04228 887 SMART ANK_2a 578 607 IPR002110 GO:0005515
Trre16g04228 887 SMART ANK_2a 609 638 IPR002110 GO:0005515
Trre16g04228 887 SMART ANK_2a 512 541 IPR002110 GO:0005515
Trre16g04228 887 SMART ANK_2a 545 574 IPR002110 GO:0005515
Trre16g04228 887 PRINTS Ankyrin repeat signature 659 673 IPR002110 GO:0005515
Trre16g04228 887 PRINTS Ankyrin repeat signature 546 561 IPR002110 GO:0005515
Trre16g04228 887 ProSiteProfiles Ankyrin repeat profile. 643 675 IPR002110 GO:0005515
Trre16g04228 887 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Trre16g04228 887 PANTHER POTASSIUM CHANNEL AKT1 20 868 IPR045319 GO:0005249|GO:0006813
Trre16g04228 887 ProSiteProfiles Ankyrin repeat profile. 545 577 IPR002110 GO:0005515
Trre16g04228 887 ProSiteProfiles Ankyrin repeat region circular profile. 643 675 - -
Trre16g04228 887 Gene3D - 513 698 IPR036770 -
Trre16g04228 887 ProSiteProfiles KHA domain profile. 804 884 IPR021789 -
Trre16g04228 887 SUPERFAMILY Voltage-gated potassium channels 49 288 - -
Trre16g04228 887 SUPERFAMILY cAMP-binding domain-like 292 487 IPR018490 -
Trre16g04228 887 PRINTS EAG/ELK/ERG potassium channel family signature 279 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g04228 887 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g04228 887 PRINTS EAG/ELK/ERG potassium channel family signature 261 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g04228 887 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g04228 887 PRINTS EAG/ELK/ERG potassium channel family signature 235 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g04228 887 Gene3D Jelly Rolls 331 491 IPR014710 -
Trre16g04228 887 Pfam Ion transport protein 55 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre16g04228 887 Gene3D - 56 288 - -
Trre16g04228 887 SUPERFAMILY Ankyrin repeat 516 700 IPR036770 -
Trre16g04228 887 Pfam Ankyrin repeats (3 copies) 517 606 IPR002110 GO:0005515
Trre16g04228 887 Pfam Ankyrin repeats (3 copies) 617 692 IPR002110 GO:0005515
Trre16g04228 887 ProSiteProfiles Ankyrin repeat region circular profile. 545 576 - -
Trre16g04228 887 FunFam Potassium channel SKOR 55 288 - -
Trre16g04228 887 FunFam Potassium channel KAT2 355 491 - -
Trre16g04228 887 SMART cnmp_10 367 484 IPR000595 -
Trre16g04228 887 CDD CAP_ED 367 472 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04228 Trre-Chr16 47267978 47284535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04228 14 869 Ion Channels AT2G25600 62.687 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04228 K21867 - gmx:100819491 1402.11